Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1931 ATGGCGATGGCGAAAGAGAAAGAGGAAGAAGAGGAGGTTTGGAACTACGCTGGGAAGAGGCTGAAATGCATGAGGAATGAGGAAAAAGGTCAAGCAGAGGAGGAAGCTGCGGAAGATGAAAGTGAGCTTCCTCTCAAGCCGGGACTCTTCTTCTACCCAACCACTCCTACGTCTTTCGTTGTCTCGGATGCCCTCGAGCCCGATTTTCCCATCATCTATGTGAACAAAGTCTTTGAATTCGTCACCGGGTATCGTGCCGACGAGGTTTTGGGTCGGAACTGTCGGTTCTTACAATATAGGGACCCTCATGCTCAAAGGAGGCACCCTTTGGTGGATCCAGTTGTTGTGTCTGAGATTAGAAGATGTCTTGAGGATGGTACTGAGTTCCAAGGTGAACTTTTGAATTTCAGGAAGGATGGCATTCCTTTAGTAAACAGGCTAAGACTTGCACCAATTCATGATGATGATGGAACTGTGACACATGTGATAGGCATCCAGCTATTTTCTGAAGCAAATATAGATTTAAGCCGTGTCTCATATCCAGTATTCAAGGAGACTTGCAGTCAGGAATTTACTAAAACTGGTAAATATTCTCTTAAGAGTGGACAATTGATATACAGCCAGCAACAAGAAATGTGTGGTATTCTTCAGCTTTCTGATGAGGTCTTGGCTCATAACATCTTATCACGGTTGACACCAAGGGATGTTGCATCCATTGGGTCTGTGTGCAGAAGGATACGACAGTTAACTAAGAATGAGCATGTTAGAAAGATGGTGTGTCAAAACGCATGGGGAAAAGAAGTGACTGGTGCATTGGAACTAATGACCAAGAAGTTAGGTTGGGGCCGTCTGAGTCGAGAACTGACTACTCTTGAGGCTGTCTGCTGGAGAAAACTGACAGTTGGAGGTGCAGTAGAGCCTTCACGCTGCAATTTCAGTGCTTGTGCTGCGGGAAATCGACTCGTATTGTTTGGGGGCGAAGGAGTTGATATGCAGCCTATGGATGACACTTTTGTACTCAATCTTGATGCTAAAGATCCCAAGTGGCGTAGGATTAGTGTGAAATCATCTCCACCTGGAAGGTGGGGCCACACCCTTTCTTGCCTAAATGGTTCTTGGTTGGTGGTTTTTGGAGGATGTGGTAGGGAAGGATTGCTTAATGATGTCTTTGTTCTTGATTTGGATGCTCAACAGCCAACATGGAAAGAAGTCTGTGGTGGAGCTCCGCCTCTCCCTAGATCTTGGCACAGCTCTTGCACAATTGAAGGGTCTAAATTGGTTGTCTCAGGTGGGTGCACAGATGCTGGGGTACTTCTTAGTGACACATACTTACTGGACCTTACTACAGATAACCCAACATGGAGAGAGATTCCGACATCTTGGGCTCCTCCTTCTCGGTTGGGGCACTCACTCTCTGTATATGGCAGGACAAAAATTCTCATGTTTGGTGGACTTGCCAAGAGTGGACACTTACGGTTACGATCAGGGGAGGCTTATACAATTGATTTAGAAGATGAAGAGCCCCAATGGAGGCAACTAGAATATAGTGCATTCTCTGGAGTGGGTGGTCAAAGTGCTGTGGTTCCTCCACCTCGGCTAGATCATGTTGCTGTGAGCATGCCTTGTGGGAGGATTATTATTTTTGGAGGTTCCATTGCAGGGCTTCACTCTCCATCTCAGCTCTTTCTTTTGGACCCTTCTGAGGAGAAACCATCATGGAGGATCCTCAATGTTCCAGGGCAACCGCCAAAATTTGCTTGGGGTCATAGCACTTGTGTGGTTGGAGGGACTAGGGTTTTGGTTTTGGGTGGAAATACCGGGGAGGAGTGGATACTTAATGAGTTGCATGAGTTATGCTTAGCTAGCAGGCAGGACTCAGACCTAAGATGA 1890 0.4656 MAMAKEKEEEEEVWNYAGKRLKCMRNEEKGQAEEEAAEDESELPLKPGLFFYPTTPTSFVVSDALEPDFPIIYVNKVFEFVTGYRADEVLGRNCRFLQYRDPHAQRRHPLVDPVVVSEIRRCLEDGTEFQGELLNFRKDGIPLVNRLRLAPIHDDDGTVTHVIGIQLFSEANIDLSRVSYPVFKETCSQEFTKTGKYSLKSGQLIYSQQQEMCGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGKEVTGALELMTKKLGWGRLSRELTTLEAVCWRKLTVGGAVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKDPKWRRISVKSSPPGRWGHTLSCLNGSWLVVFGGCGREGLLNDVFVLDLDAQQPTWKEVCGGAPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDNPTWREIPTSWAPPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEDEEPQWRQLEYSAFSGVGGQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGNTGEEWILNELHELCLASRQDSDLR 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1931 629 Gene3D - 286 509 IPR015915 GO:0005515
Dere13g1931 629 SUPERFAMILY F-box domain 210 289 IPR036047 GO:0005515
Dere13g1931 629 SUPERFAMILY Galactose oxidase, central domain 296 613 IPR011043 -
Dere13g1931 629 Gene3D - 510 628 IPR015915 GO:0005515
Dere13g1931 629 FunFam Putative LOV domain-containing protein 492 624 - -
Dere13g1931 629 CDD PAS 55 165 IPR000014 -
Dere13g1931 629 Pfam PAS domain 65 165 IPR000014 -
Dere13g1931 629 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 38 622 - -
Dere13g1931 629 Gene3D - 208 259 - -
Dere13g1931 629 FunFam Putative LOV domain-containing protein 286 491 - -
Dere13g1931 629 ProSiteProfiles PAS repeat profile. 71 102 IPR000014 -
Dere13g1931 629 CDD F-box_AtADO-like 214 260 - -
Dere13g1931 629 SUPERFAMILY PYP-like sensor domain (PAS domain) 66 166 IPR035965 -
Dere13g1931 629 FunFam Adagio protein 1 48 177 - -
Dere13g1931 629 Pfam Kelch motif 533 580 IPR011498 GO:0005515
Dere13g1931 629 NCBIfam PAS domain S-box protein 70 165 IPR000014 -
Dere13g1931 629 Pfam Galactose oxidase, central domain 309 359 - -
Dere13g1931 629 Gene3D PAS domain 52 177 - -
Dere13g1931 629 Pfam Galactose oxidase, central domain 423 474 - -
Dere13g1931 629 Pfam Galactose oxidase, central domain 374 421 - -
Dere13g1931 629 Pfam F-box domain 215 252 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1931 Dere-ChrDere13 26264015 26269960 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1931 54 167 AGC Kinase Gene Family AT5G58140 42.982 7.25e-22 99.0