Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1929 ATGTCATCGGAAAATTCCCCCACGTCGGCGGCTGAGTCCCACGCCCCTCTCCTTCGTTCTCGCCAAGGATCCTCTGATGCTGCCAGGACTCCCACCCTCGCGCTCCTTCTGGGTCGTGCCGCGGGCCGCCGCGGGCCTTCTATGCTGGTGCGGGAGACTGCGGCTCGTGAACTGGAGGAGCGCCGGGCCGACTGGGGCTACTCGAAACCCGTGGTGGCGCTCGACATCACGTGGAATATGGCCTTTGTGGTGGTCTCGGCGGTGATGCTAATTTTCACGGTCGACGAGAAGCCCAATACGCCGATCCGGCTCTGGATCTGCGGGTACGCGGTGCAGTGCTTGGTTCATGTGGTGCTCGTGTGGCTCGAGTATCAGAGGAGGAATAGTAGGGTTTCGCGGAGGCGGAGTGCTCGGGGCGGGGATACTGAAGCTGGTAACATTGAGGATGTCAACGACAGTGAGGATGAGGAAATTGGAGATGAGAGTTCATTGAATTCGTCTCGCCCTGGATTCACAAAACGATGTGAATCGGTGAATACCATGGTGTCATTCCTCTGGTGGATAGTTGGCTTTTATTGGGTGGTCTCTGGTGGTGACATCCTTCTGCAAGATGCTCCACGTTTGTATTGGTTGGCTGTTGTTTTCCTGGCATTTGATGTCTTCTTTGCCATCTTTTGTGTTGTTTTGGCATGCTTGATTGGCATTGCCCTCTGTTGTTGTTTGCCATGCATCATTGCTATTCTCTATGCTGTTGCTGGACAGGAAGGTGCATCAGAAGCAGATCTCAGTGTACTTCCGAAATACAGATTTCGCATGTTAAGCAATGAGGAAAAGCCTAGTGGGGGAGCGGGATCGATGGTTCCTGTAGAAACAAGTAGTGGGTACCTGGCAAATGAACAAATGCTTTTACCTGAGGATGCGGAATGCTGTATATGTCTCACTTCATACGAGGATGGAGCAGAACTCCATGCTCTACCCTGCAACCATCATTTCCATTCTACATGCATTGTGAAATGGTTGAAAATGAATGCAACTTGTCCTCTCTGCAAGTACAACATTCTTAAGGGAAATGAACAGGTGTGA 1083 0.518 MSSENSPTSAAESHAPLLRSRQGSSDAARTPTLALLLGRAAGRRGPSMLVRETAARELEERRADWGYSKPVVALDITWNMAFVVVSAVMLIFTVDEKPNTPIRLWICGYAVQCLVHVVLVWLEYQRRNSRVSRRRSARGGDTEAGNIEDVNDSEDEEIGDESSLNSSRPGFTKRCESVNTMVSFLWWIVGFYWVVSGGDILLQDAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSVLPKYRFRMLSNEEKPSGGAGSMVPVETSSGYLANEQMLLPEDAECCICLTSYEDGAELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1929 360 PANTHER TARGET OF ERK KINASE MPK-1 40 358 - -
Dere13g1929 360 MobiDBLite consensus disorder prediction 135 169 - -
Dere13g1929 360 MobiDBLite consensus disorder prediction 1 27 - -
Dere13g1929 360 FunFam E3 ubiquitin protein ligase RIE1 289 357 - -
Dere13g1929 360 SUPERFAMILY RING/U-box 297 354 - -
Dere13g1929 360 Pfam Ring finger domain 308 350 IPR001841 -
Dere13g1929 360 SMART ring_2 309 349 IPR001841 -
Dere13g1929 360 CDD RING-H2_PA-TM-RING 308 350 - -
Dere13g1929 360 ProSiteProfiles Zinc finger RING-type profile. 309 350 IPR001841 -
Dere13g1929 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 355 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1929 Dere-ChrDere13 26230820 26235944 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1929 1 359 C3H Transcription Factor Family AT1G68070 70.752 0.0 520