Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1914 ATGGCGGACGTTGAGGTGGATGTTGCACCAGGGCAGCCGAAGAAGAGAACGTTCAAGAAGTTCAGCTTCAGAGGCGTTGATTTGGACGCTCTTCTGGACATGTCCAGTGATGAGCTTGTCAAGCTCTTCCATGCTCGAGCCCGCAGAAGGTTTCAGAGAGGGCTGAAGAGGAAGCCTATGGCCTTGATTAAGAAGCTGCGCAAGGCGGATAGCTTGAGTTTGAGTAATCCTCTTTTGAATAATTATCCTGCTTATGAAGCTGATACAAGATGGTCAGCATACAGTTGTATGCCTCTTGATAGGAAGTTTACTTCTAAAAAAAGGGAGGCTACACCAGGTGAAAAGCCAGAACCAGTTCGCACCCACCTGCGTATTGTACCTGAAATGATTGGAAGCATTATTGGAGTATACAACGGCAAGACTTTCAATCAGGTTGAAATCAAACCTGAGATGATTGGCCATTACCTTGCAGAGTTCTCAATTTCATATAAGCCTGTCAAGCATGGGAGACCTGGTATTGGTGCCACCCACTCATCAAGGTTTATTCCCCTGAAGTGA 558 0.4624 MADVEVDVAPGQPKKRTFKKFSFRGVDLDALLDMSSDELVKLFHARARRRFQRGLKRKPMALIKKLRKADSLSLSNPLLNNYPAYEADTRWSAYSCMPLDRKFTSKKREATPGEKPEPVRTHLRIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1914 185 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 11 185 IPR002222 GO:0003735|GO:0005840|GO:0006412
Dere13g1914 185 ProSitePatterns Ribosomal protein S19 signature. 138 162 IPR020934 GO:0003723
Dere13g1914 185 PRINTS Ribosomal protein S19 family signature 138 150 IPR002222 GO:0003735|GO:0005840|GO:0006412
Dere13g1914 185 PRINTS Ribosomal protein S19 family signature 150 165 IPR002222 GO:0003735|GO:0005840|GO:0006412
Dere13g1914 185 PRINTS Ribosomal protein S19 family signature 118 137 IPR002222 GO:0003735|GO:0005840|GO:0006412
Dere13g1914 185 Pfam Ribosomal protein S19 101 168 IPR002222 GO:0003735|GO:0005840|GO:0006412
Dere13g1914 185 SUPERFAMILY Ribosomal protein S19 99 169 IPR023575 GO:0003735|GO:0005840|GO:0006412
Dere13g1914 185 Hamap 30S ribosomal protein S19 [rpsS]. 47 174 IPR002222 GO:0003735|GO:0005840|GO:0006412
Dere13g1914 185 Gene3D 30s Ribosomal Protein S19; Chain A 9 185 IPR023575 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1914 Dere-ChrDere13 26062170 26063734 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1914 1 185 Cytoplasmic Ribosomal Protein Gene Family AT1G04270 69.312 2.14e-82 239