Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1899 ATGGACGACGTCAAGGATAAGTTAAAGGGTTTCATGAAGAAAGTCTCGAAATCACCCTCTGGTAAATTCAAAGGCCAAGGAAGAGTCTTGGGATCATCCTCATCCCCATCTTCATCTTCTGCATCCGGTAATTCTATTCTTCTGCGTCCAGCGCAGAATCCTGGTCCAAAACCAAGTCCGGCAGCCGTGAATCCTCGACCGTTGCCCCAGAAAACGATCGATCCGGAGCCTAAAAGGACGGAAGGTTCGAGTAAGTCCAACTCTGATCGCAAACCGGAAAACGGGTTTGACCCTTTTGATTCTTTGATTACTACTGGGAAGAGATCTAAAAATGGGTATTCACTGAATGTGTATGAATGTCCTGTTTGTGGCCAATCGTTTAGGTCCGAGGAAGAGGTGTCTATGCATGTGGATAGCTGTCTGAGCAGCCCTGTTGAGCGTGATGATGGAAATGGTGTGTCAGAATCACCTGACAATGAAGTTGAGTCAAGAGGTGAATTGGAGGTTTGCATTGGTACTTATATATCAGGGAAGCCATCTGAGGGTTCAGTTGAAGTTGTTCTCAAACTGTTGAGGAATATTGTAAAGGAACCAGAAAATGCAAAGTTTAGGAAAATTAGGTTGAGTAATCCAAAGATAAAAGAGGCTGTTAGTGAGGTTGCAGGGGGAATTGAGTTGCTGAGCTGTGTAGGATTTGAGCTAAAGGAGGAGGATGGGGAGACATGGGCAGTGATGGAAGTTCCTACTGAAGAGCAAGTAAAATTGATTAAGAAAGCAATAGTATTACTGGAATCACCAGTACTTCAGGAACCTCAAAATAGAGACAATTTGGGATCTGGAACTTCTGCTGAGATAGATGGAGATGCAGAACCTAAGAAGGTGGACAGACAGGTAAAGGTCTTCTTTGCTGTACCAGAAAGCATTGCAGCTAAAATTGAGCTACCAGATTCTTTCTACAACCTTTCAATTGATGAGGTGAAAAGAGAAGTTGAATTAAGGAGAAAGAAGATTGCAGATTCTCAACTTTTAATCCCCAAGTCACTTAAGGAAAAGCAAGCAAAAGGCGCTAGGAGGAGATACAGAAAAACTATGATTCGGATTCAGTTTCCAGATGGAGTGGTGCTTCAAGGTGTATTTAATCCATGGGAACCAACAACTGCTCTGTATGAGTTTGTCAGCTTTGCACTGAAAGAACCAAGTTTAGCATATGACCTAATGCATCCTGTAGTTGTTCAACGACGGGTTATCCCTCGTTTTCCTAGAGCGGGGGAGAAAGCAAGAACACTAGAGGAGGAGGACCTGGTACCTTCAGCTCTAATTAAGCTCAAACCTCATGAAACGGATTCTGTTGTTTATACGGGTCTTAGAAATGAATTGCTTGAAATCAGTGAACCGCTCTTGTAA 1404 0.4316 MDDVKDKLKGFMKKVSKSPSGKFKGQGRVLGSSSSPSSSSASGNSILLRPAQNPGPKPSPAAVNPRPLPQKTIDPEPKRTEGSSKSNSDRKPENGFDPFDSLITTGKRSKNGYSLNVYECPVCGQSFRSEEEVSMHVDSCLSSPVERDDGNGVSESPDNEVESRGELEVCIGTYISGKPSEGSVEVVLKLLRNIVKEPENAKFRKIRLSNPKIKEAVSEVAGGIELLSCVGFELKEEDGETWAVMEVPTEEQVKLIKKAIVLLESPVLQEPQNRDNLGSGTSAEIDGDAEPKKVDRQVKVFFAVPESIAAKIELPDSFYNLSIDEVKREVELRRKKIADSQLLIPKSLKEKQAKGARRRYRKTMIRIQFPDGVVLQGVFNPWEPTTALYEFVSFALKEPSLAYDLMHPVVVQRRVIPRFPRAGEKARTLEEEDLVPSALIKLKPHETDSVVYTGLRNELLEISEPLL 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1899 467 CDD PUB 171 265 - -
Dere13g1899 467 Gene3D - 176 264 - -
Dere13g1899 467 Gene3D Classic Zinc Finger 114 144 - -
Dere13g1899 467 ProSiteProfiles UBX domain profile. 358 442 IPR001012 GO:0005515
Dere13g1899 467 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 466 - -
Dere13g1899 467 FunFam UBX domain-containing protein 6 352 443 - -
Dere13g1899 467 MobiDBLite consensus disorder prediction 1 105 - -
Dere13g1899 467 ProSiteProfiles Zinc finger C2H2 type domain profile. 118 136 IPR013087 -
Dere13g1899 467 MobiDBLite consensus disorder prediction 27 49 - -
Dere13g1899 467 Pfam UBX domain 360 409 IPR001012 GO:0005515
Dere13g1899 467 MobiDBLite consensus disorder prediction 141 162 - -
Dere13g1899 467 SMART PGNneu 182 249 - -
Dere13g1899 467 MobiDBLite consensus disorder prediction 72 96 - -
Dere13g1899 467 Pfam PUB domain 181 256 IPR018997 -
Dere13g1899 467 SUPERFAMILY Ubiquitin-like 334 442 IPR029071 -
Dere13g1899 467 FunFam Plant UBX domain-containing protein 2 176 262 - -
Dere13g1899 467 SUPERFAMILY PUG domain-like 180 264 IPR036339 -
Dere13g1899 467 Gene3D - 353 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1899 Dere-ChrDere13 25941459 25946501 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1899 1 390 C2H2 Transcription Factor Family AT2G01650 57.179 1.54e-149 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere13g1899 UBX 9.1e-05 CL0072