Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1897 ATGGAGAGAGATTTCATGGGTCTGAGATCAAAAGAATCATTAGCTGTGGTGAAGGAGGAGATTAACAATGATGGATGCAAAGATTCAGGCTTCACTAAGAATTCAGTCGTACAATGGCCCTTCTCGAACAAAGTCTCTGCTCTCCCACATTTGATGTCCTTTAAAGTTTCTCAAGATGACAAGACTAAGAAGATGGTGTCTGATCCCATCACATCTGCTGGATTTATGGCTATCTCTAGTTCAGATGCATTTGATGCTACTCTAAATCGCCCTGCTGGTGAAATCCAGAAACCTTTCAATCACGATGGACAAGGTGGCTTTCATTTTTCCCTGACTCCGTATCCTGTACAGCATGATGTGCATTCTCTGAATCGTCCTCATGATGTGAAGATGTTTTCAGTTCCCAATCAAGCAATTTCAGTTTCCATGGGGCACCCTTTCTTGAAGAACCATTTTGCCACTGCAGGTCAGAATACGGCCGGTGCTAATGTGAAGCAACAGCTGCTTGGGGGTATACCTGTTACTGTGCCTCATTCAGTCCTTCCCACCATTGGGTCTGTTGCTGCAATGACTGAATCATGTTTGAAGCCATCTGCAACTTCTGCTCAACTCACCATCTTCTATGCTGGTACTGTGAATGTCTTTGATGACATCTCCCCTGAGAAGGCACAAGCTATCATGTTGTTGGCTGGGAGTGGATTATCTGCAGCTTGTAACAAGGCACAGCCGCAAGTTCAGGGACCGAATTTAAAGTTGACTGCAGGTGAAGGTGCCCCTGTGAGTCAACCCATGAATACATCCCCTTGTTCTGGTCTGTCGAGTCCTTTATCTGTTTCTTCACATACTGGTGCACAGTCAGGGAGTGGCTCAACTAGCACTGATGAGTTTCTGGCGGCTAAAACAACCGGAGTTTCCACCACTCCTGTTAGCAAAGTGGAGCCTCCGAAAGTAGTCAATGCAACTGCTATGTTGCCTTCTGCTGTGCCACAGGCTCGCAAAGCATCTTTGGCTCGATTTTTGGAGAAGCGCAAGGAACGGGTGATGAATGCAGCACCATATAACCTAAACAAGAAATCCGAGGAGGGTGCTACTGCAGAATACAATGGTGCTAACTTCTCTGCAACTACTCCTGCTGCTTCTGACATCCTGTCAGCCAAGCAAGGATAG 1167 0.4636 MERDFMGLRSKESLAVVKEEINNDGCKDSGFTKNSVVQWPFSNKVSALPHLMSFKVSQDDKTKKMVSDPITSAGFMAISSSDAFDATLNRPAGEIQKPFNHDGQGGFHFSLTPYPVQHDVHSLNRPHDVKMFSVPNQAISVSMGHPFLKNHFATAGQNTAGANVKQQLLGGIPVTVPHSVLPTIGSVAAMTESCLKPSATSAQLTIFYAGTVNVFDDISPEKAQAIMLLAGSGLSAACNKAQPQVQGPNLKLTAGEGAPVSQPMNTSPCSGLSSPLSVSSHTGAQSGSGSTSTDEFLAAKTTGVSTTPVSKVEPPKVVNATAMLPSAVPQARKASLARFLEKRKERVMNAAPYNLNKKSEEGATAEYNGANFSATTPAASDILSAKQG 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1897 388 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 138 361 IPR040390 -
Dere13g1897 388 Pfam tify domain 199 231 IPR010399 -
Dere13g1897 388 Pfam Jas motif 329 353 IPR018467 -
Dere13g1897 388 SMART tify_2 197 232 IPR010399 -
Dere13g1897 388 MobiDBLite consensus disorder prediction 249 295 - -
Dere13g1897 388 MobiDBLite consensus disorder prediction 259 295 - -
Dere13g1897 388 ProSiteProfiles Tify domain profile. 197 232 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1897 Dere-ChrDere13 25915437 25918737 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1897 37 359 Tify Gene Family AT3G17860 36.607 2.03e-41 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Dere13g1897 tify 2.6e-18 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere13g1897 13 25915437 25918737 Dere13g1897 13 25915437 25918737 ECH