Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1886 ATGCCACTGCATGGTTGTGAAGCTTCGCTATCATGCCTCCACACCCCATACCCTCATGTGTGTAACCACTACATGACCACCAATACACTATCAACTTCTTCTTCTTCCTTTCATGAAATGGCTCTTAAGGTCACTATGGACCAGGCCATTCAAGCCCACAAGCTTGTCTCGACCATGAAAGTGGACAATAACTTCAAAGACAAGCGAGCCAAGTTGGCTTGGACCGATTGCTTAGAGCTCTACGAGGACACGGTTTACCAGCTGAACCGCTCCATTAAGAGCTCGAAGAATCCCAACGATAGGCTTACATGGCTAAGTGCCTCCATTGCCAACCACCAAACTTGCCAAAATGGCTTCCTTGACTTCAACCTCCATTCACATCTCAACTACTTCCCAAACATGCTTAGCAACTTTTCCAAACTGATCAGCAATTCCTTAGCCATTACCAATGCCATGTTGTCATCTTCATCATCGTCATTATCTTCGTCATCCTTATCACCAGGACAAATCAATAACGGTGGGAGAAAGTTGTTATTTGAAGGATTCCCTAACTGGGTTTCGAGCTCGGATCGGAGGCTTCTTGAGGCGGCGGGGGAGGTGACGCCGAGGGGTGATATTGTGGTGGCGAAAGATGGGAGTGGAAACTATAAGACGATATCGGAGGGGGTGGCGGCGGCCGGTAAGTTGAGTGGTGGTGGGGGGAGGAGAGTGGTGGTGCACGTGAAAGGGGGAGTGTATGCAGAGAACGTTGAGATTAAGAGGACAATGAAGAACTTGATGATCGTCGGAGATGGGATTGATGTTACCATCGTTACGGGTAGCAAGGATGCTCAAGAAACCACCACTTTTCGCTCTGCTACTTTTGCCGTTTCTGGAGATAACTTCATAGCACGAGACATAACCTTCGAGAACACCGCTGGACCAGCGAAGCACCAGGCGGTGGCTCTCCGCTCCGGCGCCGACCACTCAGTGTTCTACCGGTGCAGCTTCAAGGGCTATCAAGACACCTTGTACGTCTACTCCCAGCGCCAATTCTACCGTGACTGCGACATCTACGGCACCGTGGACTTCATCTTTGGCGACGCCGCCGCCATCCTTCAGAATTGCAACATCTACGTGAGAAAGCCGATGAGCAACCAGCAGAACACGGTGACGGCGCAGGCGAGATCCGACCCAAACGAGAACACCGGCATTATCATCCACGGCTGCCGCGTGACTGCATCGTCGGACTTGAAGCCGGTGCAGAGCTCGTTCAAGACCTTTCTGGGCAGGCCGTGGAAGATGTACTCGAGGACGGTGGTGATGAAAAGCGAGCTTGACGAGCTGATCAACCCGGCGGGATGGTTGCCGTGGAGTGGGAGCTTTGCTCTGGACACACTATACTACGGGGAGTATATGAATACTGGAACCGGTGCTGCCACCGGTGGGAGGGTGAAATGGCGAGGGTTTCACGTGATCACGAGTTCAACGGAGGCCGGCAAGTTTACCGTTGGGAACTTTTTAGCTGGCGAATCGTGGATTTCCGGCAGCGGCGTGCCGTTCGATGCTGGGTTGTGA 1557 0.5234 MPLHGCEASLSCLHTPYPHVCNHYMTTNTLSTSSSSFHEMALKVTMDQAIQAHKLVSTMKVDNNFKDKRAKLAWTDCLELYEDTVYQLNRSIKSSKNPNDRLTWLSASIANHQTCQNGFLDFNLHSHLNYFPNMLSNFSKLISNSLAITNAMLSSSSSSLSSSSLSPGQINNGGRKLLFEGFPNWVSSSDRRLLEAAGEVTPRGDIVVAKDGSGNYKTISEGVAAAGKLSGGGGRRVVVHVKGGVYAENVEIKRTMKNLMIVGDGIDVTIVTGSKDAQETTTFRSATFAVSGDNFIARDITFENTAGPAKHQAVALRSGADHSVFYRCSFKGYQDTLYVYSQRQFYRDCDIYGTVDFIFGDAAAILQNCNIYVRKPMSNQQNTVTAQARSDPNENTGIIIHGCRVTASSDLKPVQSSFKTFLGRPWKMYSRTVVMKSELDELINPAGWLPWSGSFALDTLYYGEYMNTGTGAATGGRVKWRGFHVITSSTEAGKFTVGNFLAGESWISGSGVPFDAGL 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1886 518 Gene3D - 201 518 IPR012334 -
Dere13g1886 518 SMART PMEI_2 3 148 IPR006501 GO:0004857
Dere13g1886 518 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 11 153 IPR035513 -
Dere13g1886 518 CDD PMEI-like_3 10 152 - -
Dere13g1886 518 Pfam Pectinesterase 205 503 IPR000070 GO:0030599|GO:0042545
Dere13g1886 518 NCBIfam pectinesterase inhibitor domain 11 152 IPR006501 GO:0004857
Dere13g1886 518 FunFam Pectinesterase 199 518 - -
Dere13g1886 518 SUPERFAMILY Pectin lyase-like 201 517 IPR011050 -
Dere13g1886 518 ProSitePatterns Pectinesterase signature 2. 351 360 IPR033131 -
Dere13g1886 518 Gene3D Invertase/pectin methylesterase inhibitor family protein 9 152 IPR035513 -
Dere13g1886 518 Pfam Plant invertase/pectin methylesterase inhibitor 11 148 IPR006501 GO:0004857
Dere13g1886 518 PANTHER PECTINESTERASE 10 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1886 Dere-ChrDere13 25747734 25750055 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1886 11 518 Carbohydrate Esterase AT1G23200 56.038 0.0 558