LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere13g1883	ATGACCAAATCTAGTAGTTTTCTTCATAATCTCATGAAGCCCTTCAAATTCGGTTCTAGGCAAGAGGGAAGCAACGAAAATGACTTGGAGAGAATTGCTGCCCAGGAGCAGAAGATCTTTTCCTATGAAACGTTGTTTGCTGCTACGAACAATTTTCATCCTCATCATATGCTTGGTGAGGGAGGCTTTGGACCCGTCTACAAGGGGAAGTTGAATGATGGAAGAGAGATTGCAGTGAAGAAGTTGTCACAAAGCTCAAATCAGGGGAATAAAGAGTTCATGAATGAGGCCAAGCTGTTGGCTCGTGTACAGCACCGGAATGTGGTGAATTTGTTTGGTTATTGTGCCCATGGCACAGAGAAGCTACTTGTGTATGAGTATATTTGTCATGAGAGCCTTGACAAGCTTCTGTTCAAATCTCACAAGAGAGAGCAGCTAGATTGGAAAAGGAGGCTTGACATAATCACAGGCATAGCAAAGGGCTTGCTCTATCTTCACGAAGACTCACACAACTGCATTATCCACCGTGACATCAAGGCCAGTAATATCTTGCTCGACGACAAATGGATGCCCAAGATTGCAGACTTTGGCATGGCTCGTCTCTTCCCTGAGGATCAAACTCATGTCAATACACGTGTGGCTGGCACCAATGGATATATGGCTCCAGAGTATGTGATGCACGGACATCTATCAGTGAAAGCTGATGTCTTTAGCTATGGGGTTTTGGTGTTGGAGCTGATTAGTGGCCAAAGAAACTCAACGTTTAGCCTTGAGGGGGATGCACATAATCTACTTGATTGGGCATACAAGCTTTACAAGAAAGGGAGGAGCTTAGAGATGGTGGACCCTGCACTTGCAGCTTCAGCAGTAACAGAACAAGTAGCAATGTGCATACAACTAGGTCTGCTATGCACGCAAGGGGACCCGCAGCTCCGGCCAAACATGCGGCAGGTGGTGGTGATGCTGTCGAAGAAGCCAGGCCACATGGATGAGCCGACTAGACCAGGAGTGCCTGGCTCCAGATACAGAAGACCCCGCAGACCCTCTGCATTGTCTTCCACTGCTGGTACTTCTGGTGTTGACTCTGATTCTCGTACCTCAGATTCAAGCAATAACTATACGACCACTGCATCAGCAGGAACAAGCTCGGCTGCTCCAGAAATTGACACTCGTGGAAAACGCCCCATGCACGAGGTTTAG	1200	0.4742	MTKSSSFLHNLMKPFKFGSRQEGSNENDLERIAAQEQKIFSYETLFAATNNFHPHHMLGEGGFGPVYKGKLNDGREIAVKKLSQSSNQGNKEFMNEAKLLARVQHRNVVNLFGYCAHGTEKLLVYEYICHESLDKLLFKSHKREQLDWKRRLDIITGIAKGLLYLHEDSHNCIIHRDIKASNILLDDKWMPKIADFGMARLFPEDQTHVNTRVAGTNGYMAPEYVMHGHLSVKADVFSYGVLVLELISGQRNSTFSLEGDAHNLLDWAYKLYKKGRSLEMVDPALAASAVTEQVAMCIQLGLLCTQGDPQLRPNMRQVVVMLSKKPGHMDEPTRPGVPGSRYRRPRRPSALSSTAGTSGVDSDSRTSDSSNNYTTTASAGTSSAAPEIDTRGKRPMHEV	399

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere13g1883	399	SMART	serkin_6	52	322	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere13g1883	399	Gene3D	Phosphorylase Kinase; domain 1	16	127	-	-
	Dere13g1883	399	Pfam	Protein tyrosine and serine/threonine kinase	55	321	IPR001245	GO:0004672\|GO:0006468
	Dere13g1883	399	FunFam	Cysteine-rich receptor-like protein kinase 10	16	127	-	-
	Dere13g1883	399	FunFam	Cysteine-rich receptor-like protein kinase 10	129	334	-	-
	Dere13g1883	399	MobiDBLite	consensus disorder prediction	350	385	-	-
	Dere13g1883	399	MobiDBLite	consensus disorder prediction	323	399	-	-
	Dere13g1883	399	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	26	376	-	-
	Dere13g1883	399	SUPERFAMILY	Protein kinase-like (PK-like)	37	338	IPR011009	-
	Dere13g1883	399	CDD	STKc_IRAK	58	324	-	-
	Dere13g1883	399	ProSiteProfiles	Protein kinase domain profile.	52	331	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere13g1883	399	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	173	185	IPR008271	GO:0004672\|GO:0006468
	Dere13g1883	399	Gene3D	Transferase(Phosphotransferase) domain 1	129	332	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere13g1883	Dere-ChrDere13	25724471	25729245	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere13g1883	40	336	Receptor kinase-like Gene Family	AT4G11530	51.839	6.36e-109	333

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Dere13g1883		PK_Tyr_Ser-Thr	1.6e-50	CL0016