Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1877 ATGGAAGATGCTTTGGGCAGAGAGCAACACAATGACGAAGACTGGGAGGGATTAGCTGCTCAAGATCGTAACATCTTTCCTTATAAGACCGGTGAGTTAGAGGATGGGAGAGAGATTGCAGTGAAGATGTTAGCAAAGAAATCAGATAAGGGAATGCAAGAATCCAAAAGGGAGGTTAAACTGTTGACTATGCTAGAGCATCCCAATGTGGTGAGATTGGCTGGTTATTCCGTTGCTCGTGACCATGAACCTTTGCTTGTTTACAATTATGTCAGGTGTATGAGGCTAGAGTTCTACTTTTTACTCAGGAGAGATGAGCCTGATTGGACAGAAAGGTATAAAATAATCAAAGGCATAGCAAAAGGCACACAAACTTCATCAGGAAAACAGAAGTTTAGAGATGATGGACCCTATTTGAACAGATTCTGCAGAATGCTAGGATACAACATATCTGACATCATTGATTCTGATGTCAATTCGCAACAACCTCAGCTACTCCAAGATGCTTACCAAGCATCTGGAGAAGAAATACAAAATCAGGGTGAATTTGAAGAAGTGAGTGAGCATCAAGTCCAAGGGACTTTGGATGATGGGAGAGAGATTGCAGTGAAGAAGTCATCAAAGATAACTGAAGAAAAGAGGAATACACTTATAATGGAAGTAGAGTTGCTGAGTAGCGTGAAGCATCCCAATGTGGTAAAATTGTTTGGTTATTGCACTGATGACAATGAATGCTTACTTGTTTACAAGTATCTTCCCAATCAAAGTCTTGACAAGCATTTACTCGGCAAATATGTGAGTAACGCTACAGGTCCCAAAGGGAGAAAGCAAGAGCTTGATTGGACACGGACATATGACATAATCATAGGCATCGCAAAAAGTTTAAGTTATCTTCAAGCTGACCCCCAAAACTGCATTGTCCACCGTGACATAAAGGCTGCCAATATATTGCTTGATCATAAATGGGATCCAAAAATTGGTGACTTCGGCATTAGCCGCCTGTTCGATGTAGATCGAACCCTTGTCTCTACTAACCCATTAGGGACTTGACTATATAGTTTTGGAGTTTTGGTATTGGAGCTTGTCAGTGGAAAAAGATACTATTTTAAGCCGCCGCCACCACACAACAATGTAATAGGTCTACTAGATTGGGCATACGAACTCTTCAAGATAAGCAAGACCTTAGAGATCATGGACCCTGCATTAGCAATTTCAGCCGTCACTAAAGATCGCTCATGTAGCTTTTCTGAGAGTACAAAAACCCTCTTAAAGCATTTGGACAATGGTGGATCTACCGTAAAAACAGACTGTTATTCCGTTAGCGATGTTGATGAGAACTGCTGTGGGACTGAAATGGTAAAAAAGTTATTCTACTATGACAAGTCAGTTAAATTGGAGTTGATCCACTAG 1410 0.4085 MEDALGREQHNDEDWEGLAAQDRNIFPYKTGELEDGREIAVKMLAKKSDKGMQESKREVKLLTMLEHPNVVRLAGYSVARDHEPLLVYNYVRCMRLEFYFLLRRDEPDWTERYKIIKGIAKGTQTSSGKQKFRDDGPYLNRFCRMLGYNISDIIDSDVNSQQPQLLQDAYQASGEEIQNQGEFEEVSEHQVQGTLDDGREIAVKKSSKITEEKRNTLIMEVELLSSVKHPNVVKLFGYCTDDNECLLVYKYLPNQSLDKHLLGKYVSNATGPKGRKQELDWTRTYDIIIGIAKSLSYLQADPQNCIVHRDIKAANILLDHKWDPKIGDFGISRLFDVDRTLVSTNPLGTXLYSFGVLVLELVSGKRYYFKPPPPHNNVIGLLDWAYELFKISKTLEIMDPALAISAVTKDRSCSFSESTKTLLKHLDNGGSTVKTDCYSVSDVDENCCGTEMVKKLFYYDKSVKLELIH 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1877 469 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 31 123 - -
Dere13g1877 469 FunFam Os07g0541700 protein 252 349 - -
Dere13g1877 469 Pfam Protein tyrosine and serine/threonine kinase 180 341 IPR001245 GO:0004672|GO:0006468
Dere13g1877 469 Pfam Protein tyrosine and serine/threonine kinase 34 124 IPR001245 GO:0004672|GO:0006468
Dere13g1877 469 ProSitePatterns Serine/Threonine protein kinases active-site signature. 306 318 IPR008271 GO:0004672|GO:0006468
Dere13g1877 469 SMART serkin_6 183 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1877 469 SUPERFAMILY Protein kinase-like (PK-like) 33 122 IPR011009 -
Dere13g1877 469 Gene3D Transferase(Phosphotransferase) domain 1 157 399 - -
Dere13g1877 469 ProSiteProfiles Protein kinase domain profile. 172 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1877 469 Gene3D Transferase(Phosphotransferase) domain 1 27 125 - -
Dere13g1877 469 SUPERFAMILY Protein kinase-like (PK-like) 181 405 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1877 Dere-ChrDere13 25592230 25598538 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1877 192 403 Receptor kinase-like Gene Family AT1G07650 38.961 1.12e-40 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Dere13g1877 PK_Tyr_Ser-Thr 1e-27 CL0016