Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1873 ATGCCCAAGATAACCGTGGGGAAGTTGGATGATGGGAGAGAGATTGCAGTGAAGAAGTCATCAAAGATAACTGAAGAAAAGAGGAATACACTTATAAAGGAAGTAGAGTTGTTGAGTAGCGTAAAGCACCCCAATGTGGTAAAATTGTTTGGTTATTGCGGTAATGATGCTGAATTTTTACTTGTTTACGAGTATGTTCCAAATATGAGTCTTGACAAGCTTTTATTCGGTCCTAATAGGAGAGAGCACCTTAATTGGACGCGAACATATGGCATAATTGTAGGCACTGCAAAAGGTTTGAGTTATCTTCATGGTGACCCCCAAAACTGCATCATCCACCGTGACATAAAGGCTGCCAATATTTTGCTTGATCACAAATGGGCGCCCAAAATTGCTGACTTTGGCATTAGTCGTCTATTCCAGGAAGATCAAACTCATGTCTATAGTCAAATAGTTGGGACTTGGGGATATATTGCTCCAGAGTATTTGGATCATATGCATTTGTCAGTAAAGACAGATGTATATAGTTTTGGGATTTTGGTGTTGGAGCTTATCAGTGGAAAAAGATACTCATTTAAGCTGCCTTCGGAGGACAATGCAATAGGCTTGCTTAATTGGGCGTACAAGCTTTTCAAGGCAGACAGGATCTTAGAGATTATGGACCCTGCTTTATCAGATTCAGCAGTCACTGAACAAGTGAAAAACTGCATTGAAATAGGTTTACGTTGCTCTCAAGGTGACCCAAAGTTACGTCCTAACATGGAATGTGTTGTGTCCATGCTAACAAGTTATCAATCCAACAAGAATATGTCAATTTGCAGACCAGGAATCTATGCATCTGAAGAAGCATTACAAAATATAGGAAATCAATATGAAGCACAATTCATAGTAGGGGCAGGAATTCCTGACCATAGGCAAGTGAATGACTATCAAAGCCAAGATAGTCAGGAATGGATCCCTTGCAGTTGGTTTGGGTATGATTATAGAAATTGTGTGGAAGGAGAAGGTGATGAGATTAAGAAGGAGATTGGGTTGGGAGCTGTGCCATCTAAGCTTGTGGTAGATGTGGTGGTGATTAAGGAATTTCCTGGAAAGGCAACAGTGAAAGGGTGTGCAGGGATGACATGTGGTGATTGGAGGAAGAAGGAGAGTCAATAG 1158 0.4085 MPKITVGKLDDGREIAVKKSSKITEEKRNTLIKEVELLSSVKHPNVVKLFGYCGNDAEFLLVYEYVPNMSLDKLLFGPNRREHLNWTRTYGIIVGTAKGLSYLHGDPQNCIIHRDIKAANILLDHKWAPKIADFGISRLFQEDQTHVYSQIVGTWGYIAPEYLDHMHLSVKTDVYSFGILVLELISGKRYSFKLPSEDNAIGLLNWAYKLFKADRILEIMDPALSDSAVTEQVKNCIEIGLRCSQGDPKLRPNMECVVSMLTSYQSNKNMSICRPGIYASEEALQNIGNQYEAQFIVGAGIPDHRQVNDYQSQDSQEWIPCSWFGYDYRNCVEGEGDEIKKEIGLGAVPSKLVVDVVVIKEFPGKATVKGCAGMTCGDWRKKESQ 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1873 385 Pfam Protein kinase domain 9 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1873 385 Gene3D Phosphorylase Kinase; domain 1 2 65 - -
Dere13g1873 385 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 66 271 - -
Dere13g1873 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 111 123 IPR008271 GO:0004672|GO:0006468
Dere13g1873 385 SUPERFAMILY Protein kinase-like (PK-like) 6 261 IPR011009 -
Dere13g1873 385 SMART serkin_6 4 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1873 385 ProSiteProfiles Protein kinase domain profile. 1 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1873 385 Gene3D Transferase(Phosphotransferase) domain 1 66 277 - -
Dere13g1873 385 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 7 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1873 Dere-ChrDere13 25458198 25464421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1873 7 291 Receptor kinase-like Gene Family AT4G11530 44.251 4.33e-74 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Dere13g1873 Pkinase 2.6e-45 CL0016