Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1872 ATGTTGAAAAAAATTTCTGGAAATATCCCGAAAGGGATAAAAAGTCTTCGGGGCAGAGAACGACGCAAAGACAAGGACATACAGAGATCAGCGACCCGGGAGCGTCAGATCTTTTCCTATGAAACTCTAGTTGCTGCGACCGACTACTTTCATCCTAAAAACATTCTAGGCCAAGGAGACTTCGGATCCGTCTACAAGGGAGAGTTGAAGGATGGGAACGTGATTGCAGTGAAGAAGTTATTAATCAAATCAGAACGAGGAAGGGAAGAACTAATGAGACAGGCAAAATTGTTGAGTGGTGTGAAGCACCCCAATATGGTGAAATTGCTTGGTTATTGCGCTCACAAGGATGAATATTTACTTATTTACGAGTATGTTCCCAATAAGAGTCTTCACGAATTTTTTCTGAGTTTTGTTGTGGCTGGGTTGCTTATCTTTGATTCGACGATGCAGTTCATGGTTGCCATCTTCTCCATCCTCCTAACACTTCCTTTCCTGCCATCTTCTCTGTCCTCCAAATGCCCGTCTCCTTCATTTTATCTTGAGACCTTCTTCCATATTAACCCCTTTGAGATTCCGTTGAGAGAGAGGGAAGACCTACTATTAGAGGCGCTCTTGAGAGAATAG 627 0.4306 MLKKISGNIPKGIKSLRGRERRKDKDIQRSATRERQIFSYETLVAATDYFHPKNILGQGDFGSVYKGELKDGNVIAVKKLLIKSERGREELMRQAKLLSGVKHPNMVKLLGYCAHKDEYLLIYEYVPNKSLHEFFLSFVVAGLLIFDSTMQFMVAIFSILLTLPFLPSSLSSKCPSPSFYLETFFHINPFEIPLREREDLLLEALLRE 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1872 208 SUPERFAMILY Protein kinase-like (PK-like) 27 142 IPR011009 -
Dere13g1872 208 MobiDBLite consensus disorder prediction 1 29 - -
Dere13g1872 208 ProSiteProfiles Protein kinase domain profile. 50 208 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1872 208 Gene3D Phosphorylase Kinase; domain 1 12 125 - -
Dere13g1872 208 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 23 125 - -
Dere13g1872 208 ProSitePatterns Protein kinases ATP-binding region signature. 56 79 IPR017441 GO:0005524
Dere13g1872 208 Pfam Protein tyrosine and serine/threonine kinase 53 135 IPR001245 GO:0004672|GO:0006468
Dere13g1872 208 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 22 134 - -
Dere13g1872 208 MobiDBLite consensus disorder prediction 14 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1872 Dere-ChrDere13 25448965 25450430 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1872 19 136 Receptor kinase-like Gene Family AT5G40380 44.068 7.97e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Dere13g1872 PK_Tyr_Ser-Thr 5e-16 CL0016