Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1865 ATGTTCGCCTCAACAATCGGTACACCCTCTAAGCTGAACCTTTCGCATTTCGTCATACTCGCACCAAACGCCGACATAGAAATCCTCCCACGTGGAAGCAGAAAATATCGGAGAAGCAGAGTATGGGTTTATCCCAAACTAATCCATCAGAATTGTAGTCTCTACCCCAAATCGCGCTTTAAACCTGTAGTGGCCGCAAGGGCCAGTAATGGTGGTGATGGCTCATTGGATGCTACCTCACAACAGTCTTCTCCTCCACCTGATGCTGAAGAAGTGAAGAGCTCTTCTGGCCTTGGTGATGGTTATGTGGCCTTGTTTGTTCGTATGTTAGGCTTAGATCATGATCCTCTTGATAGAGAACAGGCTATAATTGCTATATGGAAATATTCACTTGGTGGAAAGAAGTGCATTGATACTTTAATGCAGTTTCCTGGTTGTATTAATCTTACTGTGAACCTCCTTAGATCAGAGTCTTGTTTAGCATGTGAAGCTGCTGCAGGCCTTCTGCGATCTCTATCTTCAGTCAATATATACAGGGATTCTGTAGCAGAGAGTGGAGCGATAGAAGAGATAAATAGATTGCTGAGGCAGTCTTCCTTGGCTCCTGAGGTAAAGGAGCAGAGTATGAGTACATTGTGGAATTTATCCGTGGATGAGAAGCTCCGCATTAAACTTGCAAAGAGTGATATCCTTCCATTGATTATTAAGTACCTTGATGATGAGGATGTAAAAGTGAAAGAATCTGCAGGAGGCATATTGGCAAATTTAGCTTTGAGCCATGTCAACCACAGCATTTTGGTTGAAGCAGGTGTTATACCAAAATTGGCAAAGTTCTTAACTTCTGATACCAAAGAATCCAAAGTCATTAAAAAGGAAGCAAAAAATGCATTGCTGGAACTTGCTAAGGATGAATATTATAGAATTCTTGTTGTTGAGGAAGGTCTGATTCCTGTGCCATTACTTGGTGCTGGGGCCTATAAGTCATTCACCCCTGGTCTGCATTCATGGCCCACATTACCAGATGGTACAGAGATTGAACGAACTTCTAGAAAACCTTCCAGGTTTGGTGCATCCGAATTACTTCTTGGACTAAATATTGATGACAAGAGTGATAACATAGAGGAAGCAAAAATGAATGCAATTGTTGGACGGACACAACAACAATTCCTTGCTCGTATTGGGGCTATAGAATGGGAAGGAAAAAAAGCATCTGATTCTGAAAGCTCTGATAATCAACAACTTACACTTTTACCTTGGATGGATGGTGTTGCTCGCTTGGTTCTGATTCTAGAACTGGAAGATATGTCTGCCATAACAAGGGCTGCAGAGTCAATTGCTGATGTATCTATCAATGAACATATACGTATTGCATTTAAGGAGGCTGGAGCGATTAAGCATTTGGTTCGGCTTTTGAATTGTGACAATGATGCTGTCAGATTGGCTGTAACTCAAGCTTTGGAGAGGTTGTCCGCCAGCAATGTGGTTTGCCAAATAATTGAAGCTGAGGGTGCATTAGGTCCTTTAATTAGTATTCTAAAGTGCTCAGAGATCTCTGAAACTATAGCAGAAACGTCTTTGAATACAATTGCTCGCATATTAGACCCCAGTAAAGAGTTGAAATTGAAGTTTTATAATGGACCAGTTAATGGATCTGAGAAGGCCTTAGGTGGAGTTAAAAATGATGCTGTTTCAACTGGGTTAAGTACCACTGAGCATACCATATCAATGACAACTAACAGGAATGATGTACTGGATTCTGCTTTCATTGCCCGCCTTGTTGAGATTCTGAAGTCCTCTTCTCCCAATTTACAAGGAAAAGCTGCAACAGTGCTCGAGTTTGTGGCATTGACTGACCCAACTATGGTCTCTGTTATATCTGTGAATATTGAATCTGGTCTCGATGCTGTTTTTCAGCAAAAAATTTTGAGAATTTCAGCAAATGGAGAATCTGATGTAGAAGATCAGGTTTCAGAAGCATACCCAATCGAAGTTGAAGAAGCTGGCGTTGCAATATCTGCAGGGTCCCGGTTAATGACAAGACTACTTGATTTTCAGCATTTTCGCGACAAAATAAAATCCTCCCATTTTATTGGCTTGCTTCGAGAAATCCTCAAGTCTTGTATTCCTCTCCGCAGCAAAGATTGGGTGGCTGCTTGCCTGGTTAAACTCAGTGCTCTCTCCAGTCACAACCCAAGTTTTGACCCAATCAATGTGGAAATCACACTTTATGAGACAATCCCAAGACTAATAGAACAGATCAAAACTTCGTTCTCTCTGGAAGCACAGGAAGCCGCTGTTGTAGAACTGAACAGGATAATTTCTGAAGGAGGGGTAAATTCTATTAGAGCTGTTGTTTCTGAGGGGGCAATAGATCCTTTGGTGAAGCTGATAGAAGCAGGCAGTGAAAGGGCTGTTGAAGCAGGCTTGGCTATATTGTATAATCTGAGCATGGACAGTGAGAACCATTCAGCAATTGTGGCTGCTGGAGCAGTCCCTATATTAAGAAGGATTGTGCTATCACAAAGGCCACAATGGGTAAGGGCACTTCATTTGCTGAGGAGTTTGCCTACATGA 2574 0.4196 MFASTIGTPSKLNLSHFVILAPNADIEILPRGSRKYRRSRVWVYPKLIHQNCSLYPKSRFKPVVAARASNGGDGSLDATSQQSSPPPDAEEVKSSSGLGDGYVALFVRMLGLDHDPLDREQAIIAIWKYSLGGKKCIDTLMQFPGCINLTVNLLRSESCLACEAAAGLLRSLSSVNIYRDSVAESGAIEEINRLLRQSSLAPEVKEQSMSTLWNLSVDEKLRIKLAKSDILPLIIKYLDDEDVKVKESAGGILANLALSHVNHSILVEAGVIPKLAKFLTSDTKESKVIKKEAKNALLELAKDEYYRILVVEEGLIPVPLLGAGAYKSFTPGLHSWPTLPDGTEIERTSRKPSRFGASELLLGLNIDDKSDNIEEAKMNAIVGRTQQQFLARIGAIEWEGKKASDSESSDNQQLTLLPWMDGVARLVLILELEDMSAITRAAESIADVSINEHIRIAFKEAGAIKHLVRLLNCDNDAVRLAVTQALERLSASNVVCQIIEAEGALGPLISILKCSEISETIAETSLNTIARILDPSKELKLKFYNGPVNGSEKALGGVKNDAVSTGLSTTEHTISMTTNRNDVLDSAFIARLVEILKSSSPNLQGKAATVLEFVALTDPTMVSVISVNIESGLDAVFQQKILRISANGESDVEDQVSEAYPIEVEEAGVAISAGSRLMTRLLDFQHFRDKIKSSHFIGLLREILKSCIPLRSKDWVAACLVKLSALSSHNPSFDPINVEITLYETIPRLIEQIKTSFSLEAQEAAVVELNRIISEGGVNSIRAVVSEGAIDPLVKLIEAGSERAVEAGLAILYNLSMDSENHSAIVAAGAVPILRRIVLSQRPQWVRALHLLRSLPT 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1865 857 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 788 830 IPR000225 GO:0005515
Dere13g1865 857 Gene3D - 403 637 IPR011989 -
Dere13g1865 857 Gene3D - 662 856 IPR011989 -
Dere13g1865 857 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 186 219 IPR000225 GO:0005515
Dere13g1865 857 MobiDBLite consensus disorder prediction 71 96 - -
Dere13g1865 857 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 229 271 IPR000225 GO:0005515
Dere13g1865 857 Gene3D - 95 322 IPR011989 -
Dere13g1865 857 SUPERFAMILY ARM repeat 425 844 IPR016024 -
Dere13g1865 857 SUPERFAMILY ARM repeat 106 320 IPR016024 -
Dere13g1865 857 SMART arm_5 492 534 IPR000225 GO:0005515
Dere13g1865 857 SMART arm_5 259 302 IPR000225 GO:0005515
Dere13g1865 857 SMART arm_5 218 258 IPR000225 GO:0005515
Dere13g1865 857 SMART arm_5 777 817 IPR000225 GO:0005515
Dere13g1865 857 SMART arm_5 575 616 IPR000225 GO:0005515
Dere13g1865 857 SMART arm_5 174 217 IPR000225 GO:0005515
Dere13g1865 857 SMART arm_5 451 491 IPR000225 GO:0005515
Dere13g1865 857 SMART arm_5 818 854 IPR000225 GO:0005515
Dere13g1865 857 MobiDBLite consensus disorder prediction 73 90 - -
Dere13g1865 857 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 79 857 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1865 118 317 U-box Gene Family AT1G23030 28.218 1.33e-10 63.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere13g1865 13 25389957 25407935 Dere13g1865 13 25389957 25407935 ECH