Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1856 ATGAAGAGAGAGCATCACCAGCTTCGTCCGAACCCAGGTGAGTCATCCATGGCTGCGAGCTCTAGTGGGACATCAAAGCTCTGGCAAGAGGAGGCACAAGACGGTGGGATGGACGAGCTTCTGGCCGTGCTTGGGTACAAGGTGAGGTCTTCGGACATGGCGGAAGTGGCCCAGAAGCTCGAACAGCTTGAAGAAGCTATGGGTAATGTTCAGAACGGTATCTCTCAACTGTCTTCTGAAACCGTCCATTACAACCCTTCTGATCTATCTACCTGGCTTGAAAGCATGCTTTCTGAGCTCAACCCATCTCCCAATTTCGACCCCATGACTGCCGTCGCCGGCGCCGTCTCTGCGCCCCCACCCCAACCGCCTTCTTCAGTTGATGATTCGTCGTTCTTGGCTCCGGCTGAGTCGTCCACCATAACCTCCATTGATTTTACTGACCTTAGCCAACAGCAACATATGAATCCTCTGCATAAGCACCATGATAGCTTAATCTTCCAAGACGCGTCTTCTTCAGATTACGATCTCAAAGCTATTCCTGGTAAAGCAATATACAGCAGTCAAACTCAAACCCAGCTCCAGCAGCAGCTTGAATCTCCTTCTTCCAGAGAAACCAAACGATTGAAACCCTCATCCTGTGTGTTCAACCCAGCATTGTTCTCGCCCTCTTCTTTGGGGTCTTTTGGCTTACCCACCGAGTCAACTCGTCCGGTGGTGCTCGTGGACTCGCAAGAAAACGGAATTCGACTCGTCCATGCATTGATGGCTTGCGCGGAAGCCGTACACCAGAACAATTTCCCTCTCGCTGAAGCTCTGGTAAAACAGATCGGATTCCTTGCGGTGTCTCAAGCCGGAGCTATGCGCAAGGTCGCGACCTACTTCGCCGAAGCGCTTGCTCGCCGGATATATAGGCTTTATCCTGAAAACCCACTTGACCATTCTCTCTCCGACATGCTTCAGATTCACTTCTACGAGACCTGCCCATACCTCAAATTTGCCCATTTCACAGCAAACCAAGCCATTCTTGAAGCCTTCGAGGGTAAAAAGCGAGTTCATGTTATCGATTTCAGTATGAATCAAGGGATGCAATGGCCGGCTCTCATGCAAGCACTGGCTCTCCGACCTGGTGGTCCACCAGCGTTTCGGTTAACCGGAATCGGACCACCTGCACCGGATAATTCGGATCACCTTCAGGAAGTGGGCTGGAAACTCGCTCGGCTGGCAGAAACGATTCACGTTGAATTTGAGTACAGGGGATTCGTTGCGAACAGTCTAGCCGATCTAGATGCTTCGATGCTCGAACTCAGATCGAGTGAGGTTGAGTCAGTGGCTGTTAACTCGGTGTTTGAGCTTCACAAATTGTTGGCCCGACCCGGTGCGATCGAGAAGGTGTTATCGGTGGTGAAGCAGATGAAGCCGGAGATAGTCACCGTCGTGGAGCAAGAAGCGAACCACAACGGACCGGGTTTCCTGGACCGGTTCACCGAGTCACTGCACTATTACTCGACCCTGTTCGACTCGTTGGAGGGATCGGTCGACACTCAGGATAAGGTCATGTCAGAGGTGTATCTGGGGAAGCAAATCTGCAACGTGGTTGCCTGCGAGGGGGTGGACCGAATCGAGAGGCACGAAACGCTGGATCAATGGCGGTCCCGGTTGGGTTCGGCTGGTTTCACTCCGGTTCACCTGGGTTCGAACGCTTTCAAGCAAGCAAGCATGCTTCTGGCTCTCTTCGCCGGTGGAGATGGTTACAGAGTGGAAGAGAACAATGGGTGTCTGATGCTGGGTTGGCATACTCGGCCATTGATCGCTACCTCGGCGTGGCGACTCGCGGAGAAATCGGTTGTTGTTCGCTGA 1860 0.5263 MKREHHQLRPNPGESSMAASSSGTSKLWQEEAQDGGMDELLAVLGYKVRSSDMAEVAQKLEQLEEAMGNVQNGISQLSSETVHYNPSDLSTWLESMLSELNPSPNFDPMTAVAGAVSAPPPQPPSSVDDSSFLAPAESSTITSIDFTDLSQQQHMNPLHKHHDSLIFQDASSSDYDLKAIPGKAIYSSQTQTQLQQQLESPSSRETKRLKPSSCVFNPALFSPSSLGSFGLPTESTRPVVLVDSQENGIRLVHALMACAEAVHQNNFPLAEALVKQIGFLAVSQAGAMRKVATYFAEALARRIYRLYPENPLDHSLSDMLQIHFYETCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAPDNSDHLQEVGWKLARLAETIHVEFEYRGFVANSLADLDASMLELRSSEVESVAVNSVFELHKLLARPGAIEKVLSVVKQMKPEIVTVVEQEANHNGPGFLDRFTESLHYYSTLFDSLEGSVDTQDKVMSEVYLGKQICNVVACEGVDRIERHETLDQWRSRLGSAGFTPVHLGSNAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWRLAEKSVVVR 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1856 619 Pfam GRAS domain family 251 610 IPR005202 -
Dere13g1856 619 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 188 606 IPR005202 -
Dere13g1856 619 MobiDBLite consensus disorder prediction 190 209 - -
Dere13g1856 619 MobiDBLite consensus disorder prediction 13 29 - -
Dere13g1856 619 MobiDBLite consensus disorder prediction 1 33 - -
Dere13g1856 619 ProSiteProfiles GRAS family profile. 242 610 IPR005202 -
Dere13g1856 619 SMART DELLA_2 38 110 - -
Dere13g1856 619 FunFam DELLA protein GAI 36 100 - -
Dere13g1856 619 Coils Coil 53 80 - -
Dere13g1856 619 Gene3D - 36 100 IPR038088 -
Dere13g1856 619 Pfam Transcriptional regulator DELLA protein N terminal 38 104 IPR021914 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1856 Dere-ChrDere13 25269323 25271182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1856 1 612 GRAS Transcription Factor Family AT2G01570 65.342 0.0 775
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Dere13g1856 GRAS 1.7e-137 CL0063