Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere13g1846 | ATGGATAACATTCTGGGTCTTCTCAAACTTCGGATCAAAAGAGGTATTTCTCTCGCAATTCGTGATACTCGTAGCAGTGACCCTTATGTCGTTGTCACCGCCGGCGACCAGAAAGTGAAGACTCGTGTGGTGAAGAATAACCGCAACCCTGAGTGGGATGAAGAATTGACACTCTCTGTTAAGGATGTCAACACTCCAATTCATCTAACTGTTTTTGATCATGACACATTCACTGTGGATGACAAAATGGGGGATGCAGAAATAGACATAAAGCCATATCTTCAGTGTTTGAAGATGAACTTGACCAACCTCTCAAATGGTTGTGTAGTGAAGAGAATTCAACCAGATGGGAAAAACTACCTTGCTGATGAGAGCAGCTGCATATGGAACAACGGAAAAATCACCCAAGAAATGACTCTTTCGCTGAGAAATGTAGAGTGTGGCTACGTGGTTGTGGAAATTGAGTGGAAGGAAATTCCAGGATGTAAGGGCTTGTCTGGGATCGAGATCTAA | 513 | 0.4327 | MDNILGLLKLRIKRGISLAIRDTRSSDPYVVVTAGDQKVKTRVVKNNRNPEWDEELTLSVKDVNTPIHLTVFDHDTFTVDDKMGDAEIDIKPYLQCLKMNLTNLSNGCVVKRIQPDGKNYLADESSCIWNNGKITQEMTLSLRNVECGYVVVEIEWKEIPGCKGLSGIEI | 170 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere13g1846 | 170 | CDD | C2_ArfGAP | 5 | 148 | - | - | |
| Dere13g1846 | 170 | SMART | C2_3c | 7 | 102 | IPR000008 | - | |
| Dere13g1846 | 170 | ProSiteProfiles | C2 domain profile. | 1 | 103 | IPR000008 | - | |
| Dere13g1846 | 170 | Pfam | C2 domain | 7 | 92 | IPR000008 | - | |
| Dere13g1846 | 170 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 2 | 91 | IPR035892 | - | |
| Dere13g1846 | 170 | Gene3D | C2 domain | 3 | 161 | IPR035892 | - | |
| Dere13g1846 | 170 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4 | 3 | 163 | IPR044562 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere13g1846 | Dere-ChrDere13 | 25040724 | 25042533 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere13g1846 | 38 | 166 | C2H2 Transcription Factor Family | AT1G70790 | 61.069 | 2.25e-53 | 164 |