Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1842 ATGTCTAGGGTTGGGTCTTCACTAATCCTCCTATTGATTTCAATCTTCCTGATCCCTCGTGAAGTTTCCAACTCCTACGCTGGTTCTGCTAGTGCCATCATCAACCCTTCAAAAGTCAAACAGGTTTCATGGAAGCCAAAAGCTTTTGTTTATGAAGGTTTCCTCATGGACTTGGAATGCAACCACTTGATCTCTATAGCCAAATCAAAGTTGAAGAGATCAGCAAAGAAAACAAAGAAGAACCTACAGGAGAGGAAGGAGCATCGAATTATTTTGGAAAAGAAGTTGGCTGATGCTAATGTCTCAGAGGAAGATCAAAACAACCTGCTTAAGTTTCTAGAGAAAAAGGAAACTAAATATATGCGCCATCAAAGGCATAAGATGGGTGTTGATGATTTTAAGTTATTAACTATGATTGGGAAAGGTGCATTTGGAGAGATCAGAGTCTGCAGGCAAAAGACAACAGGTCATGTATACGCAATGAGAAAGCTAAAAAAGTCAGAGATGCTTCGTAGAGGCCAGGATGATGAGTATTTGTATCTTATTATGGAGTATCTACCTAGTGGAGATGTGATGACCCTTCTTATGAGAAAAGATACCTTGACCGAAGATGAAGCCAGATTTTATGTTGGAGAAACAATTCTGGCTATTGAATCTATACATAAACACAATTATATCCATCAGGATATCAAGCCTGATAATTTGCTACTTGATAGATATGGACACTTGAGACTTACACAGAAAGATGGTTACTAA 756 0.3849 MSRVGSSLILLLISIFLIPREVSNSYAGSASAIINPSKVKQVSWKPKAFVYEGFLMDLECNHLISIAKSKLKRSAKKTKKNLQERKEHRIILEKKLADANVSEEDQNNLLKFLEKKETKYMRHQRHKMGVDDFKLLTMIGKGAFGEIRVCRQKTTGHVYAMRKLKKSEMLRRGQDDEYLYLIMEYLPSGDVMTLLMRKDTLTEDEARFYVGETILAIESIHKHNYIHQDIKPDNLLLDRYGHLRLTQKDGY 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1842 251 SMART serkin_6 133 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1842 251 CDD MobB_NDR_LATS-like 67 128 - -
Dere13g1842 251 Gene3D Phosphorylase Kinase; domain 1 175 189 - -
Dere13g1842 251 Gene3D Phosphorylase Kinase; domain 1 72 174 - -
Dere13g1842 251 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Dere13g1842 251 ProSiteProfiles Protein kinase domain profile. 133 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1842 251 PANTHER SERINE/THREONINE-PROTEIN KINASE 68 174 - -
Dere13g1842 251 FunFam Non-specific serine/threonine protein kinase 190 249 - -
Dere13g1842 251 SUPERFAMILY Protein kinase-like (PK-like) 113 246 IPR011009 -
Dere13g1842 251 Gene3D Transferase(Phosphotransferase) domain 1 190 246 - -
Dere13g1842 251 Pfam Protein kinase domain 174 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1842 Dere-ChrDere13 24990721 24991690 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1842 64 246 AGC Kinase Gene Family AT2G20470 67.619 1.07e-94 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Dere13g1842 Pkinase 6.3e-17 CL0016