Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1820 ATGTCTGATTCATTCAACGCCTTCAAGCTTCACTCTCTCAGTACTCCAAATTCCGCCCTTAGCTCTCCAGCACCTCCCAAAATCATACCCCTTTGTATTTGCACCCTCTGCACCAATCTAATATCCTTAAATAATCATCCGGGAGATGAAGGTGCAAGTACAGTTAGAGGGTTGCATGGGCAATCTCAACAAAGCTCAAGGTGGAGTCCAACACCAGCTCAGTTACTGATCCTCGAAGAACTGTACAGACAAGGGACGAAGACACCAACGGCTGAACAAATCCAGCAAATAGCTTTGCAGCTACGTCGTTTTGGCAAGATCGAAGGGAAGAATGTGTTCTACTGGTTCCAGAATCACAAAGCAAGAGAGCGTCAGAAACGACGTCGCCGGGAGATGGAGGAAACTACTTCTGATTCCGCTGACGACAAAGTGCTGTACGTTAATAAGGGAAGCGCAGAAGAAAAGCAAGAGGCTGAAGGGTTGAGAAGGACAGGTTACGAAGTTAAAGAGACAAAGAAATGGGCATCTACTTCAAACTGCAGTGCACTAGCAGAGGAACCTGTTTCACAACTGGAAGTAGCAGAAAGCAGACCAAATAAGTGGACTAAACTTGAGGAGAAAAGAGCACAAGTTTTGAAAGCACAACAAAGAGCATCTCACCCCCAAAACTCAACCTCTCAAAATCATAATTCACCATTTATATTTGACAGAGAAAATTGCACCTATTGTGATGATGAAGAATATTCAAACCCTAGGACCCTTGAGCTTTTTCCACTCAAGAGGGATGACGAAGATGGCATATCTCTCAATGAAAGGAAATCTAGACTTCGTGTCTCAACTTCTTTGGGCACTGACATAACCATCTCAAGCCAGTTTTTTCAGTTTCTTCCTCTAAAAGATTGA 903 0.4374 MSDSFNAFKLHSLSTPNSALSSPAPPKIIPLCICTLCTNLISLNNHPGDEGASTVRGLHGQSQQSSRWSPTPAQLLILEELYRQGTKTPTAEQIQQIALQLRRFGKIEGKNVFYWFQNHKARERQKRRRREMEETTSDSADDKVLYVNKGSAEEKQEAEGLRRTGYEVKETKKWASTSNCSALAEEPVSQLEVAESRPNKWTKLEEKRAQVLKAQQRASHPQNSTSQNHNSPFIFDRENCTYCDDEEYSNPRTLELFPLKRDDEDGISLNERKSRLRVSTSLGTDITISSQFFQFLPLKD 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1820 300 CDD homeodomain 67 121 IPR001356 GO:0003677
Dere13g1820 300 Gene3D - 58 131 - -
Dere13g1820 300 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 53 294 IPR044555 GO:0003700|GO:0099402
Dere13g1820 300 SMART HOX_1 63 130 IPR001356 GO:0003677
Dere13g1820 300 ProSiteProfiles 'Homeobox' domain profile. 61 126 IPR001356 GO:0003677
Dere13g1820 300 MobiDBLite consensus disorder prediction 215 232 - -
Dere13g1820 300 SUPERFAMILY Homeodomain-like 60 128 IPR009057 -
Dere13g1820 300 MobiDBLite consensus disorder prediction 210 232 - -
Dere13g1820 300 Pfam Homeodomain 65 125 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1820 Dere-ChrDere13 24435523 24438246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1820 65 195 Wox Gene Family AT3G18010 51.145 4.00e-37 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Dere13g1820 Homeodomain 5.2e-19 CL0123