Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1816 ATGGCAAGGCGCTTGATTCCGAGCCTTAATCGCGTCCTGATCGAGAAAATAGTACCTCCGTCGAAGACCACCGCTGGCATTCTCCTCCCTGAAAAGTCCTCCAAGCTTAATTCCGGGAAGGTGATTGCAGTTGGACCTGGAACGCGAGACAAAGCAGGGAACTTGATTCCGGTGTCCCTTAAGGAGGGCGATAACGTGCTGTTGCCGGAGTACGGTGGCACCCAAGTCAAGCTCAATGACAAAGAGTTGCATTTGTATAGGGAAGAGGATATCTTGGGCACTCTGCATGATTGA 294 0.5136 MARRLIPSLNRVLIEKIVPPSKTTAGILLPEKSSKLNSGKVIAVGPGTRDKAGNLIPVSLKEGDNVLLPEYGGTQVKLNDKELHLYREEDILGTLHD 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1816 97 Gene3D GroES chaperonin 1 97 IPR037124 GO:0006457
Dere13g1816 97 FunFam 10 kDa chaperonin, mitochondrial 1 97 - -
Dere13g1816 97 Pfam Chaperonin 10 Kd subunit 6 94 IPR020818 GO:0005524|GO:0006457|GO:0044183
Dere13g1816 97 SMART Cpn10_2 4 95 IPR020818 GO:0005524|GO:0006457|GO:0044183
Dere13g1816 97 CDD cpn10 4 95 IPR020818 GO:0005524|GO:0006457|GO:0044183
Dere13g1816 97 SUPERFAMILY GroES-like 3 96 IPR011032 -
Dere13g1816 97 PRINTS 10kDa chaperonin signature 82 95 IPR020818 GO:0005524|GO:0006457|GO:0044183
Dere13g1816 97 PRINTS 10kDa chaperonin signature 5 20 IPR020818 GO:0005524|GO:0006457|GO:0044183
Dere13g1816 97 PRINTS 10kDa chaperonin signature 26 47 IPR020818 GO:0005524|GO:0006457|GO:0044183
Dere13g1816 97 PRINTS 10kDa chaperonin signature 61 73 IPR020818 GO:0005524|GO:0006457|GO:0044183
Dere13g1816 97 PANTHER 10 KDA HEAT SHOCK PROTEIN 2 94 IPR020818 GO:0005524|GO:0006457|GO:0044183
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1816 Dere-ChrDere13 24405136 24405975 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1816 10 96 Calmodulin-binding Proteins AT5G20720 37.500 1.53e-10 53.9