Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1798 ATGGCGATCATACCTGGAAGCTCTTCCAGCTTGGAATTGACTATATCTGTCCCTGGCTTTGCATCTTCTCCTCCTCTTCCTTCACCTTCAGTGAGAGAGTTAGACATAAACCAGGTACCGTCATCAGAAGAGGAATGGATGACGATGGAAGACGAAGAAGAAAGCAGCAATGGTGGAGGAGGAGGAGGCGCTCCCCGCAAGAAACTCCGTCTCACCAAGGAACAGTCTCGTCTTCTTGAAGAAAGCTTCCGACAAAATCACACTCTCAACCCCAAGCAGAAGGAGTCATTGGCAATGCAGTTGAATCTGCGACCGAGGCAAGTTGAGGTGTGGTTTCAGAACCGTAGGGCCAGGAGCAAGCTGAAGCAGACAGAGATGGAGTGCGAGTACTTGAAGAGGTGGTTTGGATCACTCACAGAACAAAACAGGAGGCTCCACAGAGAGGTGGAGGAGCTGAGGGCTATGAAAGTGGGTCCTCCCACTGTGATTTCACCCCACACTCGCCAGCCACTTCCTGCCTCTACCCTAACTATGTGTCCTCGCTGCGAGAGGGTCACCACCACCACCACCACCATTACCACCACTGTCGCTACTGCCGACAAGGGTCCCGCCGTGGTACCCACCAGCGGCCCCACCTTTCCCTCCAGAGTAGGGACGCCCGCCCTACATTCTCATTACCCTTCGCCGGCTTGTTTCCCAGTCTCTTCTTCCAATGTATAA 720 0.5347 MAIIPGSSSSLELTISVPGFASSPPLPSPSVRELDINQVPSSEEEWMTMEDEEESSNGGGGGGAPRKKLRLTKEQSRLLEESFRQNHTLNPKQKESLAMQLNLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLHREVEELRAMKVGPPTVISPHTRQPLPASTLTMCPRCERVTTTTTTITTTVATADKGPAVVPTSGPTFPSRVGTPALHSHYPSPACFPVSSSNV 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1798 239 SMART halz 122 165 IPR003106 GO:0006355|GO:0043565
Dere13g1798 239 Pfam Homeobox associated leucine zipper 122 156 IPR003106 GO:0006355|GO:0043565
Dere13g1798 239 ProSitePatterns 'Homeobox' domain signature. 97 120 IPR017970 GO:0000981|GO:0006355
Dere13g1798 239 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 44 198 - -
Dere13g1798 239 SUPERFAMILY Homeodomain-like 47 123 IPR009057 -
Dere13g1798 239 ProSiteProfiles 'Homeobox' domain profile. 62 122 IPR001356 GO:0003677
Dere13g1798 239 Coils Coil 135 155 - -
Dere13g1798 239 FunFam Homeobox-leucine zipper protein 18 50 127 - -
Dere13g1798 239 SMART HOX_1 64 126 IPR001356 GO:0003677
Dere13g1798 239 Gene3D - 38 124 - -
Dere13g1798 239 MobiDBLite consensus disorder prediction 16 67 - -
Dere13g1798 239 CDD homeodomain 65 123 IPR001356 GO:0003677
Dere13g1798 239 Pfam Homeodomain 66 120 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1798 Dere-ChrDere13 24220814 24224683 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1798 31 196 Homeobox Transcription Factor Family AT1G70920 61.310 9.74e-63 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dere13g1798 Homeodomain 2.2e-17 CL0123