Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1784 ATGCTCCTTAAGTCTTCTTTGACAGAGAGCTTATTAGACTCTGTTTTATCTTCGGACAAACACAGCGAAAGCAAAGCGCGGATAGAGAGAGCGAGAGATACCGTAACAATGGCCGGCGCCGTCGCCGGAGACCGCACACCGGAGCTCCTTGGTTTAGTTCATGACATTGCTGGAATGTGCAGCGGAGCTGGGGGATCCTCTTCTGCTGCCGCCATTGACGGCGATGCTGTGTTCAAGAAGGACTGCACCGATCTGGTTCGTCGGATCTCCCTCCTCACGCATTTGTTTGAGGAGATTAGGGACTCGAAGAAGGCTGTCGTTGATTCTGGGAGCTTGGATGCTTCCACTTCGTCCACTGGCTCTGCATCTTGCTGGTCCTCTGATCTGGTGCTCGCTCTCCACTCCGCTAAGCGCCTTCTCTCCGTCGCTAAGAACTTCCGTTCTAATTACTCTTCTGATGGAGCTGCCAAGACAATTGTGTTTCAATTTCAGTGTGTGACATGGAAATTGGAAAAGCTATTAAGCATCCTACCGTATGACCGTTTGGACATATCAGAGGAAGTCAGAGAACAGGTGGAGTTGGTGAGAACCCAATTGAGACGAGCCACTGAAAAATATGGATCTATGATTTCAAAGCTGTCATCTTGTGACTTATCCCAACCACAGGGGCAAGAAGTTAGTCAAAATCTTGGCAAATCTGTGAGTGGATTGCATAAACAAAATAGCTGTCCTGATTATTTGTCAGAACTAGAAAGCATTCCTAGAAGCAATGGATGGAAAAGTTGCAGCACAAATCAGGCAAGTCCTCACTTAGAAAGGGCACGGAGCATCCCTGCATCTTCTGAGGTTTCCCTATCAAATCTCATTGATCCTGAAAGTCAAGAAAATTCTGTCAAAAAGAGTCTGACTGAAGTTAAAAAGCCTGAAGCAATTGTAATTCCTGAAGATTTTCTTTGCCCTATATCCTTGGAGCTAATGAGGGATCCTGTTATTGTGGCCACAGGTCAGACATATGAGAGATCTTACATCCAGAGATGGATAGATGGAGGAAATACAACATGTCCAAAAACTCAGCAGAAGCTCCAAAATTTGACACTTACACCAAATTATGTTTTACGGAGCCTTATAACTCAGTGGTGTACGGAGCACAACATTGAGCAGCCAACAGGACTAACAAATGGCAAAATAAAAAAGAGTGATGGATCATTCAGAGATGTTACGGGTGACATAGCAGCCATTGGAGCTCTGGTCCGGAAGCTTTCCAGCCGGGCCATTGAGGAGCGTAGAGCAGCTGTTGCTGAAATTCGATCACTTTCCAAACGAAGCACAGACAACAGGATACTTATTGCCGAAGCAGGAGCTATTCCAGTTCTGGTTAACCTTTTAACATCAGAAGATGTACTGACTCAAGAAAATGCAGTTACTTCCATTCTTAATCTCTCTATATATGAGAACAACAAAGGACTTATAATGCTTGCTGGTGCCATCCCATCTATTGTCCAAATCTTAAGAGCTGGAAGCATGGAAGCAAGAGAAAACGCAGCAGCAACGCTCTTTAGCTTGTCCCTTGCAGATGAGAACAAAATAATAATTGGTGCCTCAGGAGCTATCCCTGCTTTAGTAGAATTGCTCCAAAATGGGAGCCCTAGAGGGAAGAAAGACGCAGCAACAGCACTATTCAACTTATGCATATATCAAGGTAACAAGGGTAGGGCCATAAGAGCTGGGATCATTACAGCATTATTGAAGATGCTTACAGATTCAAGCAAATCAATGGTTGACGAAGCCCTGACAATAATGTCAGTTCTTGCCAGCCACCAAGAGGCAAAGGTTGCTATTGTAAAGGCCAGCACTATACCTGTTCTGATAGATCTTTTGAGGACAGGACTGCCTCGAAACAAAGAGAATGCAGCTGCCATTTTACTTGCCCTGTGTAAGAGGGATGCCGAAAACCTGGCCTGTATAAGTAGACTTGGTGCTGTCATACCTTTGACTGAACTTGCTCGGAGTGGCACAGAAAGAGCTAAACGGAAGGCTACTTCACTATTGGAGCATCTTCGGAAGTTACAGCATCTTTGA 2079 0.4507 MLLKSSLTESLLDSVLSSDKHSESKARIERARDTVTMAGAVAGDRTPELLGLVHDIAGMCSGAGGSSSAAAIDGDAVFKKDCTDLVRRISLLTHLFEEIRDSKKAVVDSGSLDASTSSTGSASCWSSDLVLALHSAKRLLSVAKNFRSNYSSDGAAKTIVFQFQCVTWKLEKLLSILPYDRLDISEEVREQVELVRTQLRRATEKYGSMISKLSSCDLSQPQGQEVSQNLGKSVSGLHKQNSCPDYLSELESIPRSNGWKSCSTNQASPHLERARSIPASSEVSLSNLIDPESQENSVKKSLTEVKKPEAIVIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDGGNTTCPKTQQKLQNLTLTPNYVLRSLITQWCTEHNIEQPTGLTNGKIKKSDGSFRDVTGDIAAIGALVRKLSSRAIEERRAAVAEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVLTQENAVTSILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLADENKIIIGASGAIPALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDSSKSMVDEALTIMSVLASHQEAKVAIVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDAENLACISRLGAVIPLTELARSGTERAKRKATSLLEHLRKLQHL 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1784 692 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 535 577 IPR000225 GO:0005515
Dere13g1784 692 Gene3D - 592 691 IPR011989 -
Dere13g1784 692 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 387 IPR013083 -
Dere13g1784 692 FunFam RING-type E3 ubiquitin transferase 391 591 - -
Dere13g1784 692 Pfam U-box domain 313 384 IPR003613 GO:0004842|GO:0016567
Dere13g1784 692 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 453 495 IPR000225 GO:0005515
Dere13g1784 692 FunFam RING-type E3 ubiquitin transferase 312 387 - -
Dere13g1784 692 Pfam Armadillo/beta-catenin-like repeat 525 563 IPR000225 GO:0005515
Dere13g1784 692 Pfam Armadillo/beta-catenin-like repeat 443 481 IPR000225 GO:0005515
Dere13g1784 692 SUPERFAMILY ARM repeat 412 686 IPR016024 -
Dere13g1784 692 FunFam RING-type E3 ubiquitin transferase 592 691 - -
Dere13g1784 692 PANTHER U BOX DOMAIN-CONTAINING 79 687 - -
Dere13g1784 692 SMART arm_5 648 688 IPR000225 GO:0005515
Dere13g1784 692 SMART arm_5 483 523 IPR000225 GO:0005515
Dere13g1784 692 SMART arm_5 524 564 IPR000225 GO:0005515
Dere13g1784 692 SMART arm_5 442 482 IPR000225 GO:0005515
Dere13g1784 692 SMART arm_5 565 605 IPR000225 GO:0005515
Dere13g1784 692 SMART arm_5 606 646 IPR000225 GO:0005515
Dere13g1784 692 CDD RING-Ubox_PUB 314 366 IPR045210 -
Dere13g1784 692 Gene3D - 395 487 IPR011989 -
Dere13g1784 692 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 494 536 IPR000225 GO:0005515
Dere13g1784 692 SUPERFAMILY RING/U-box 312 387 - -
Dere13g1784 692 ProSiteProfiles U-box domain profile. 312 386 IPR003613 GO:0004842|GO:0016567
Dere13g1784 692 SMART Ubox_2 316 379 IPR003613 GO:0004842|GO:0016567
Dere13g1784 692 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 576 618 IPR000225 GO:0005515
Dere13g1784 692 Coils Coil 185 205 - -
Dere13g1784 692 Gene3D - 488 591 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1784 Dere-ChrDere13 24034987 24037999 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1784 37 688 U-box Gene Family AT1G23030 62.328 0.0 746