LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere13g1783	ATGAGGAAGCCTTTTTGTGACAAGGTAATGAACAAAGGAGCTTGGTCCAAACAAGAAGACCAGAAACTCATTGATTACGTCAAGAGACATGGAGAGGGTTGCTGGCGTACTCTCCCTCAAGCTGCTGGCTTATATCGCTGTGGTAAAAGCTGTAGGCTGAGATGGATAAACTATCTTCGGCCAGACCTCAAAAAAGGCAACTTTGCTGAAGATGAAGAAGATCTCATCATCAGGCTTCATGCACTCCTAGGCAATCGGTGGTCACTGATAGCTGGAAGATTGCCTGGGCGAACAGACAATGAAGTGAAGAACTATTGGAATTCTCATCTGAGAAGAAAGCTCATAAACAATAGCATTGATCCAAATAATCATCGGTTAATTCGAAATCTGCCATTGTTGTCTGGTAGCTCAGCATCATCGTATAATGGCCTGAAAGATAATAATAGTACCAAGAATGATGAGCCAACAAAACCGCACGGGGATGACAACCATAATTATGACCTAGTTTCTGATGCAGCAAGTAGTGGCTTGGGGGAAGAGTCATTTTGCTTACCAGATTTGAACCTTGATCTCACTATGAGCAACAATGTTGCTTCATCACCTCCTCTTCCACCTTCTGTCGCTGAAGGAGCCAGTGCTGGTCAAAAGCCAGTTCATGAATATTCTAAAACATCAAGAGAACTTCTTCTATTTAGGTGA	699	0.4292	MRKPFCDKVMNKGAWSKQEDQKLIDYVKRHGEGCWRTLPQAAGLYRCGKSCRLRWINYLRPDLKKGNFAEDEEDLIIRLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHLRRKLINNSIDPNNHRLIRNLPLLSGSSASSYNGLKDNNSTKNDEPTKPHGDDNHNYDLVSDAASSGLGEESFCLPDLNLDLTMSNNVASSPPLPPSVAEGASAGQKPVHEYSKTSRELLLFR	232

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere13g1783	232	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	7	59	IPR017930	-
	Dere13g1783	232	SMART	sant	11	61	IPR001005	-
	Dere13g1783	232	SMART	sant	64	112	IPR001005	-
	Dere13g1783	232	MobiDBLite	consensus disorder prediction	200	232	-	-
	Dere13g1783	232	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	60	114	IPR017930	-
	Dere13g1783	232	MobiDBLite	consensus disorder prediction	150	166	-	-
	Dere13g1783	232	ProSiteProfiles	Myb-like domain profile.	7	59	IPR001005	-
	Dere13g1783	232	Pfam	Myb-like DNA-binding domain	65	110	IPR001005	-
	Dere13g1783	232	Pfam	Myb-like DNA-binding domain	12	59	IPR001005	-
	Dere13g1783	232	CDD	SANT	67	110	IPR001005	-
	Dere13g1783	232	Gene3D	-	66	129	-	-
	Dere13g1783	232	FunFam	MYB-related transcription factor	11	64	-	-
	Dere13g1783	232	CDD	SANT	14	59	IPR001005	-
	Dere13g1783	232	MobiDBLite	consensus disorder prediction	138	170	-	-
	Dere13g1783	232	ProSiteProfiles	Myb-like domain profile.	60	110	IPR001005	-
	Dere13g1783	232	FunFam	MYB transcription factor	66	127	-	-
	Dere13g1783	232	Gene3D	-	12	64	-	-
	Dere13g1783	232	PANTHER	TRANSCRIPTION FACTOR MYB8-RELATED-RELATED	1	154	-	-
	Dere13g1783	232	SUPERFAMILY	Homeodomain-like	11	106	IPR009057	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere13g1783	Dere-ChrDere13	24019863	24021155	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere13g1783	2	194	MYB Transcription Factor Family	AT2G16720	54.774	1.37e-71	218

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Dere13g1783		Myb_DNA-binding	4.2e-15	CL0123