Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1767 ATGGGGGATCACTTTGTATTGCTGGTTGATCGATTGCTCACTGAATCCACATTAGAAGCTGCACTTGAAAGCAGAAATCGTGCCATGCAGGAGGCTGCATCCTCAGCAGTGAATGAAGCAGCTGAAGTTGATGTCTCTTTGATGAAGATGGGTCTAGAAGACGAGAAATCTCCAAGGAAAATTGTAGAATGCAGGATATGCCATGACGAGGATGAAGATTCCAATATGGAGACACCGTGCTCCTGTTGTGGTAGTTTGAAGTATGCACACCGCAGATGTATACAAAGGTGGTGTAATGAGAAGGGTGACACCACCTGTGAGATATGCCACCAGCAATTTAAACCTGGTTATACTGCTCCACCTCCGCTATTTCAATTTGGACGTATTCCAATGAGTTTCAGGGGAAATTGGGAGATTTCCAGAAGAGACTTGAACAGTACTCATTTGGTTAGCATGGTTTCCACTGACCAGAATCTTATCAATTCCAACTATGATCAGTATTCAGCTTCTACTGCAGGAAATTTCCCAGGCTTTCGTTCAGTTGCTCTTATTTGCATGGTTCTACTGATTGTAAGACACGCTCTTCCTCTCATATTTAGTGGTGACATGGACTATTCTTTACCACTCTTTATGTTATTACTATTTCGAACTGCGGGAATTGTTCTGCCGATATACTTCATGGTCAGAGCAGTGACATCTATACAGCGGCGTTGGCGGCAACAAAGGGAGCCTCCTAATGCATTGATCAATCTATCGGATGAAAGGGAGCAAGTAGATTTGCAGTCCCAGCTCCATGTCATTCGTATTCAGTGA 813 0.4367 MGDHFVLLVDRLLTESTLEAALESRNRAMQEAASSAVNEAAEVDVSLMKMGLEDEKSPRKIVECRICHDEDEDSNMETPCSCCGSLKYAHRRCIQRWCNEKGDTTCEICHQQFKPGYTAPPPLFQFGRIPMSFRGNWEISRRDLNSTHLVSMVSTDQNLINSNYDQYSASTAGNFPGFRSVALICMVLLIVRHALPLIFSGDMDYSLPLFMLLLFRTAGIVLPIYFMVRAVTSIQRRWRQQREPPNALINLSDEREQVDLQSQLHVIRIQ 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1767 270 FunFam Zinc finger family protein 52 119 - -
Dere13g1767 270 ProSiteProfiles Zinc finger RING-type profile. 64 110 IPR001841 -
Dere13g1767 270 CDD RING_CH-C4HC3_MARCH 64 110 - -
Dere13g1767 270 Pfam RING-variant domain 64 109 IPR011016 GO:0008270
Dere13g1767 270 SUPERFAMILY RING/U-box 62 114 - -
Dere13g1767 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 119 IPR013083 -
Dere13g1767 270 SMART ringv_2 63 110 IPR011016 GO:0008270
Dere13g1767 270 ProSiteProfiles Zinc finger RING-CH-type profile. 56 116 IPR011016 GO:0008270
Dere13g1767 270 Pfam Protein of unknown function (DUF3675) 115 231 IPR022143 -
Dere13g1767 270 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 241 IPR033275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1767 Dere-ChrDere13 23772077 23774809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1767 58 110 C3H Transcription Factor Family AT2G37950 48.214 8.29e-08 49.7