Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1745 ATGGCTTCACGCAGGCTCTTATCGTCTCTGATTCGATCCTCCATACGTCGATCTCCATCGAAGTCCTCCATTACCGGCTCAAGGCCCAGGCTTTCTTCCCCAAGCGTTTCGGGTCGTCCTTCTCCGTATGGCTACCTCCTCACCCGATTCGCCGAGTATGCCACCTCTGCGGCAGCTGCTGCGCCACCGACTCCGGCAAAAACGGGCGCCGTTGGTGGTGGTGGTGGGAAGATCGTCGATGAGTTCACTGGTAAAGGTGCGATCGGGCAAGTGTGCCAGGTCATTGGTGCCGTCGTGGATGTTAGATTCGAGGAGGGTTTACCGCCGATCTTGACTGCGCTTGAGGTTCTGGATAACTCGATCCGATTGGTACTGGAGGTGGCGCAACACTTAGGTGAGAACATGGTTAGAACTATTGCAATGGATGGGACTGAAGGGCTTGTTAGAGGACAGCGCGTGCTCAACACTGGGTCCCCTATCACCGTTCCTGTTGGTAGGGCAACCCTTGGCCGTATCGTGAATGTCATTGGAGAGCCTATTGATGAGAAGGGTGAAATTAAAACTGAGCACTTCTTGCCCATTCATAGAGAAGCTCCTGCTTTTGTTGAGCAAGCAACTGAGCAGCAGATCCTTGTTACTGGGATTAAGGTTGTGGACCTACTCGCACCATACCAAAGGGGTGGAAAGATTGGGTTGTTTGGTGGTGCTGGTGTAGGAAAAACTGTGCTTATTATGGAACTTATCAACAATGTTGCAAAGGCTCATGGTGGTTTCTCTGTGTTTGCTGGTGTTGGTGAAAGAACCAGAGAGGGTAATGATTTGTACAGAGAAATGATTGAGAGTGGTGTCATTAAGCTTGGAGACAAGCAGAGTGACAGCAAATGTGCTCTTGTGTATGGTCAAATGAATGAGCCTCCTGGTGCTCGTGCCCGTGTTGGTCTTACTGGGCTTACTGTAGCTGAGCACTTCCGTGATGCTGAAGGGCAAGATGTGCTTCTTTTTATTGACAACATTTTCCGATTTACCCAGGCCAACTCAGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTTGGTTACCAACCAACCTTGGCTACCGATCTTGGAGGTCTTCAAGAACGTATTACAACCACCAAGAAAGGTTCAATTACCTCTGTCCAGGCTATATATGTGCCTGCTGATGACTTGACTGATCCAGCTCCCGCTACCACCTTTGCTCACTTGGATGCTACAACTGTGTTATCGCGACAGATCTCTGAGCTGGGTATCTATCCTGCTGTGGACCCCCTGGATTCTACATCTCGTATGCTTTCTCCCCATATTTTGGGTGAGGACCACTACAATACTGCTCGTGGAGTACAAAAAGTTCTTCAGAACTACAAGAATCTTCAAGATATCATTGCCATTTTGGGAATGGATGAGCTCAGTGAAGATGATAAGTTGACTGTTGCTCGAGCGCGTAAAATTCAAAGGTTCTTGAGCCAGCCTTTCCATGTAGCAGAAGTTTTCACTGGTGCCCCGGGCAAATATGTAGACTTGAAGGAGAGCATTAACAGCTTCCAGGGTGTGTTGGATGGCAAGTACGATGACCTTCCAGAGCAATCATTTTATATGGTTGGAGGTATTGACGAGGTCATCGCTAAGGCAGACAAGATTGCTAAGGAATCAGCTTCGTAA 1680 0.4887 MASRRLLSSLIRSSIRRSPSKSSITGSRPRLSSPSVSGRPSPYGYLLTRFAEYATSAAAAAPPTPAKTGAVGGGGGKIVDEFTGKGAIGQVCQVIGAVVDVRFEEGLPPILTALEVLDNSIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIVNVIGEPIDEKGEIKTEHFLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQSDSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEDHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVDLKESINSFQGVLDGKYDDLPEQSFYMVGGIDEVIAKADKIAKESAS 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1745 559 PANTHER ATP SYNTHASE 77 556 - -
Dere13g1745 559 PIRSF ATPase_subunit_beta 7 559 - -
Dere13g1745 559 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 441 IPR027417 -
Dere13g1745 559 ProSitePatterns ATP synthase alpha and beta subunits signature. 426 435 IPR020003 GO:0005524
Dere13g1745 559 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 85 159 IPR036121 GO:0046034|GO:1902600
Dere13g1745 559 FunFam ATP synthase subunit beta 438 557 - -
Dere13g1745 559 NCBIfam F0F1 ATP synthase subunit beta 88 552 IPR005722 GO:0015986|GO:0045261|GO:0046933
Dere13g1745 559 Gene3D - 438 559 IPR024034 -
Dere13g1745 559 Gene3D - 78 159 - -
Dere13g1745 559 FunFam ATP synthase subunit beta 77 159 - -
Dere13g1745 559 FunFam ATP synthase subunit beta 160 437 - -
Dere13g1745 559 CDD ATP-synt_F1_beta_N 87 160 - -
Dere13g1745 559 Gene3D - 160 437 IPR027417 -
Dere13g1745 559 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 214 435 IPR000194 GO:0005524
Dere13g1745 559 CDD F1-ATPase_beta_CD 161 440 - -
Dere13g1745 559 Hamap ATP synthase subunit beta [atpB]. 86 553 IPR005722 GO:0015986|GO:0045261|GO:0046933
Dere13g1745 559 Pfam ATP synthase F1 beta subunit 1 49 IPR020971 GO:0000275|GO:0005524|GO:0006754|GO:0016887
Dere13g1745 559 CDD ATP-synt_F1_beta_C 442 549 - -
Dere13g1745 559 MobiDBLite consensus disorder prediction 14 39 - -
Dere13g1745 559 Pfam ATP synthase alpha/beta family, beta-barrel domain 91 157 IPR004100 GO:0046034|GO:1902600
Dere13g1745 559 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 438 554 - -
Dere13g1745 559 Gene3D ATP synthase, F1 beta subunit 1 53 IPR042079 -
Dere13g1745 559 SMART AAA_5 226 498 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1745 Dere-ChrDere13 23564488 23567997 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1745 124 496 Primary Pumps ATPases(2) AT1G20260 29.177 1.83e-29 120