Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1717 ATGGAAGATAGAACTGTTTCATTGATCAATTCCGTTCCTAGTTTTGCTCAAGGTTTTGAGATTCTGCTGGTTCATAATGACACTTTGTCCCTCATCAACCTGTCATCTATGCTTGAGAAATACTCATTCAGAGTTACTGTTACTGATGAAGCACAAGCGGCTATGTCCATGATTTGCCAACATGAAGGCCAATTCAACCTGGTAATGGCTAAAGCTAACATGCCTGACATGGATACCCTTTGCTTTCTGCACTTCCTGATTGAAAAAGACATTCCTGTTATCTTCATCTCATCAGGAGAATACAATGATGTAACTTGGAAAGCACTGGCTAAAGGGTCATGTTATTTCCTGGAGGAACCGATCGTTTTACAGGATCTCAAATATGTGTGGCAGCATGTTTATCACACAAAAGTCGACTCTGCCAAGAAAACTCATAATGCAAACTGTGTAAACCAGGTTAATGGAACTCTTGGTGATAGCATATGCATGCAAAAAGAGAAGAGAAAAAAATCCCAGACGAACTTCGACAGCAATCATCTTACTGCTGCTATGGAGAAGGAAGAGGAAGTAGCAAGAGAACAAAATTACCATGGATATCCTGAGAAAAAACCACGTATTGCTTGGACTCCGGAGCTGCATCAGAAGTTTATAGATGCCATTAGTGTTCTGGGCGACAAGAATAATATTCGTCCAAAAGCTATACTAGAACTGATGAATGTGCCTAACCTGTCAGCTCGCCAGGTTTCAAGTCATCTTCAGATGGATGATAATGGAGGGAAAGGGAAGATAAACCTTTCCCCTAGTTTAGGACTTCCAAAGCCTTCTTTCCTTAATATTTATGAGTTCTCTCAAGTGGGTGGATTCAGTGAAGGCACAGTAGTTCCAAGATGTGCATGTGATATATCAACTGTCGAATTTGCTCCAGGTTTCCCTGCATCAACTGCAGGCCTGAGCGGGAGCCAGAATCAAAACCAGTTTCCATTGAATTACTCTGAAACTCAAGAATCAGATATGCCACAACTGCTGGAACCCCTACACTTTCCTTATGAAGGTCCAACAGCACTGTCCAATTATGGAAGCCAAAACCTAGAAGCTGTTGGGGGACAACCTATACCAGATGCTTCAATGCATCAAAACCAAACCATGACAGCATATGATACTATAAAAATGCTCGAGGAAGATTTTGATCAATATGACTATACTCAGAACGGACTATTTCCAGATCAAATTGATCAATACAGTGAGATGCTAGGGAACATTTGTCGAGGAGAGAGCTCTAGTGTACAAGAGCCTGATATCTGA 1302 0.4132 MEDRTVSLINSVPSFAQGFEILLVHNDTLSLINLSSMLEKYSFRVTVTDEAQAAMSMICQHEGQFNLVMAKANMPDMDTLCFLHFLIEKDIPVIFISSGEYNDVTWKALAKGSCYFLEEPIVLQDLKYVWQHVYHTKVDSAKKTHNANCVNQVNGTLGDSICMQKEKRKKSQTNFDSNHLTAAMEKEEEVAREQNYHGYPEKKPRIAWTPELHQKFIDAISVLGDKNNIRPKAILELMNVPNLSARQVSSHLQMDDNGGKGKINLSPSLGLPKPSFLNIYEFSQVGGFSEGTVVPRCACDISTVEFAPGFPASTAGLSGSQNQNQFPLNYSETQESDMPQLLEPLHFPYEGPTALSNYGSQNLEAVGGQPIPDASMHQNQTMTAYDTIKMLEEDFDQYDYTQNGLFPDQIDQYSEMLGNICRGESSSVQEPDI 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1717 433 Pfam Response regulator receiver domain 21 127 IPR001789 GO:0000160
Dere13g1717 433 SMART REC_2 19 130 IPR001789 GO:0000160
Dere13g1717 433 Pfam Myb-like DNA-binding domain 207 253 IPR001005 -
Dere13g1717 433 NCBIfam myb-like DNA-binding domain, SHAQKYF class 203 254 IPR006447 GO:0003677
Dere13g1717 433 Gene3D - 200 261 - -
Dere13g1717 433 SUPERFAMILY Homeodomain-like 201 254 IPR009057 -
Dere13g1717 433 PANTHER - 9 254 - -
Dere13g1717 433 Gene3D - 19 151 - -
Dere13g1717 433 SUPERFAMILY CheY-like 18 135 IPR011006 -
Dere13g1717 433 CDD REC_typeB_ARR-like 21 134 - -
Dere13g1717 433 ProSiteProfiles Response regulatory domain profile. 20 134 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1717 Dere-ChrDere13 23208504 23212954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1717 15 253 Response Regulator Gene Family AT2G25180 30.992 4.97e-34 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Dere13g1717 Response_reg 3e-09 CL0304