Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1712 ATGAATGCAACTCAGTACACCTCCACTGCCAACACACAGAAAGTTAACATTTTTAAGCTTAGAAGTTACAAGAAGGGTACCATCTCAATGGATTCAAACACTTCAAGCTTTCTTTTTAACTCTTCAACTTTTCAATCTGCTTTCTACCAAGGCAAACAGGATGATGATGGCATGATTGATCTGGGTCTCAGTCTCAGAACTCTGCAGCCTGAAGCTTATCATTCTTCTAACAACTTGTTAACTCTGAGGGGATATGATGACCTTATGGATTGGCCACAGTCTAATCTCAACCTCAAGAGCCCAAGCACAATGCATTCTAGATCTGTCCCAGAAAACTTTGATGAAGAGCTAGAGGGTGTACAGAGCAATGATAGGTGGGCTTATGTGAAGGTTAACATGGATGGGATTACTGTTGGCAGAAAAATCTGTGTCCTTGAACATGATGGCTACCCAAGTCTTGCAAACCAGTTAGAAAACATGTTTGGAAGCAAGTCGGTTTCTGGTTTAAAATTGTTCCAATCTGGATCAGAGTATTCACTGTTATACAAGGACAGAGAAGATAATTGGAGAACTGTAGGTGATGTTCCATGGAAAGGGTTTGTCGAAAACGTGAAGAGGATGAGGATTACAAGAAAGAATGCAGCTTTTGATTCCTGCACATCTAGCTACACCTAG 675 0.4089 MNATQYTSTANTQKVNIFKLRSYKKGTISMDSNTSSFLFNSSTFQSAFYQGKQDDDGMIDLGLSLRTLQPEAYHSSNNLLTLRGYDDLMDWPQSNLNLKSPSTMHSRSVPENFDEELEGVQSNDRWAYVKVNMDGITVGRKICVLEHDGYPSLANQLENMFGSKSVSGLKLFQSGSEYSLLYKDREDNWRTVGDVPWKGFVENVKRMRITRKNAAFDSCTSSYT 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1712 224 Gene3D - 120 222 - -
Dere13g1712 224 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 78 214 IPR003311 GO:0005634|GO:0006355
Dere13g1712 224 SUPERFAMILY CAD & PB1 domains 125 209 - -
Dere13g1712 224 Pfam AUX/IAA family 116 214 IPR033389 -
Dere13g1712 224 ProSiteProfiles PB1 domain profile. 126 214 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1712 Dere-ChrDere13 23139662 23141093 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1712 121 209 B3 DNA Binding Superfamily AT1G59750 34.831 1.99e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dere13g1712 AUX_IAA 4.2e-22 CL0072