LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere13g1702	ATGAATCCTCTTCCACCCGTTTATGTGTTTCCCATCTTCTTCTTGTTTTCTGACCTTGTGCTTCGTCTTTCTTCTGCTGCTTCTGGAGACTGTCCTTCTACCATTTACTGCGGAAACCTGGGCAAGCTTCATTTCCCTTTCACCACTTCCCATCGCAAGAACTGTGGAATGTTAGCCATTCATGGTTGTAATGATTCTAATCCCAATGCACCTAAAACTGTGCTATTGAAGAATGAAAAGCTTCGAGTGAGATATATTGACGAATGTGCTATTTTCGTTACCGACGATGATTTAAAAAGTAGTTTGGCAAATGGTAGCTGTGAAGCCTTCGGCCATAATATTAGTGTTCCTCCCAGGTCTGCCTTGGGCTATTTTCAGATCAGAAATAATATAACCCTCTACAAATGCAATAGCAAGCACCAAGGTAGCCCTCCAAAGCAATTTTTAAACTATACAGGCTGTTTTAAGAGTAAGAATGAGATGATCTACTTTGGAACTCAGAATCAAGAAAATCCTCCAGCTTTAGCAGCATGCTCGAGGGTTCAGCTTCCAGTGACTAACCTTGCTTTTTCGGGGGACCCATTTACATTCGTAGCTGCCGAATTCCCCATTGAATTTCATTTTTCTGATGACTGTAAACGATGTTATTTTGGTAAACAAGGCCAGTGTCGACTTGATGACAAAGGAGGCACTTTTTGTTCCAAATCCAGAGGAAAGCTTCAAGATGGGCGAGAAGTTGCAGTGAAACATCTATTCAATCACTACCATAAGCGAGTAGAGCAGTTCATGAATGAGATTGAGATCCTCACTCGCTTACGGCACAGAAATCTTGTCTCCCTCTATGGTTGTACTTCGCATCAGAGCCGTGAGCTCCTTCTTGTTTACGAATACATTCCAAATGGCACTGTTGCCAGTCATCTCCGCGGCCACACAGCAAATCCTGCGTTACTGACATGGCCTAAACGTATCAAAATCGCCATAGAAACTGCAAGCGCGCTGGCTTACCTCCATGCTTCTGGTATCATCCACCGTGATGTTAAAACCAACAACATTCTCCTTGACGACAATTTCTGCGTTAAGGTTGCAGATTTTGGGCTTTCTAGATTGTTCCCCAACGATGTGTCCCATGTTTCTACGGCTCCACAAGGAACCCCGGGTTATCTTGACCCTGAGTATCACTGTTGCTTCCGGCTCACGAATAAAAGTGATGTGTACAGCTTTGGGGTTGTGCTTATGGAGTTGATATCTTCTATGCCAGCGGTTGATATAGGAAGAGATACAGATGAGATCACGTTGGGGAATCTGGCAGTGAGGAAGATTCAGAGAAGTGAATTTGAGGAGCTGGTTGATCCTTGTTTGGGGATCGAGAAGGACAGTGAGGTCAAGAAAATGTTGGTTGCAGTGGGGGAACTGGCTTTTCAGTGTCTGCAGAGGGATAGGGAGTTGAGGCCCTCCATTGACAAGGTTTTGGAGGTTTTGAAGAAAATTGAGGGTGGCAAGGAAGAAGGTGAGGATGGTGGAATTTCAGAGAAGTCTTTTCACTGTGGACATCTTAGGGAAATTCACTTTCCCTTCACCAACGGGAACGTCCCAGAATGTGGTTTACTCCCCATAATAGGTTGTGGTGATCCAGAGGACGCACCTAAACTCGTCCAATTCCAATTGGGAACCAACAAATGGTTCAAAATTGAAAGCATCGATTACAAGGATCGCAAAATTGAAATCCGCATTCAAGACGATGAGTTTCAAGAGCTCCTGGATCAACAATCTTGCAGTGCCTTCAACTATAAACTCCCTATACCTCCGGCGTCTTCTATGTTGTCATTTTACGTCGAACAAAATATCACCCTCTTCAAGTGCAGCTACAGTGAACATGAACAGTACTCCTTTTATAAAGCCTGTGATGATTACGATATCATCTACTCTGGTCCTATCTGGCCAAATAACGACTTTTTCAACGCTTGTACTCGTGTCCAGATGCCAGTTAAAACCCCCTTTAAATTAACTGCAGAAATACTCATAGAAGTAGAAGTGTCTGGGCCTTGTCTTGACTGTCATAACCGAGGAGAGCAATGTCGAACTGATGGAAAATGTATTCACTATGACCCGCTTCCTCCTGCTCATGCACGGGAGGACCAGAGACGGAATCGGATGCTTATAGTAATAGGCTTCGGAATTGTTTACTACGGTAAGCTTAAAGACGGACGAGAAGTTGCTGTCAAGCATTTATTCGAGCGCAACTACAGACGCGTAGAGCAATTCAAGAATGAAATTGAGATCCTCACACGCCTACGCCACGGAAACCTTGTGTCACTCTATGGTTGCACTTCGCGTCACAGTCGTGAGCTGCTGCTGGTCTATGAGTACATTCCAAACGGAACTCTTGGGTGTCATCTCCATGGCAATCTAGCAAAGCCTGGTTCACTGCCATGGCCTGTGAGGATGAGAATTGCCATAGAGACAGCAAGGGCACTGTCGTATCTCCATGCCTGTGACATCATACACCGTGATGTCAAAACCAGCAACCTTCTCCTTGACAACCATTTCTGTGTCAAGGTTGCAGACTTTGGTCTTTCAAGGTTGTTCCCCAACTTTGTCACTCATGTGTCCACAGCTCCAGCAGGATCCCCAGGTTATTTGGACCCTGAATATCACCAATGCTACCAGCTTACTAACAAGAGTGATGTGTATAGCTTTGGGGTTGTGCTCATTGAGCTGATATCTTCTATGCCAGCTATTGATATTACAAGGAGTACAGATAAGATTAAGTTGGCAAATCTAGCAGTAAAGAAGATACAAAAAAGTGCGTTTATTGAGCTGGTAGATCCTTCCCTTGGTTTTGAGTCAGATAATGAGGTTAAGAGGATGATAGTTTCAGTGGCAAAGTTGGCTTTTCAGTGCTTGCAGAGGGACAAGGAACTGAGACCTTCCATGGATGAAGTTTTGCAGGTGCTGCAGAAAATTGAAATTGGGAAGGATGGTCTTGAGCATCTGGAGTTTAATGGTGCTGGGATTTCAGACAGGGGGATGCATGTATCTCTACCAACCTCTCTGTATGGGGATGAAGTTGGATCGCTGAAGAATTTGAAGCCACAGCGCCTTCACCAAACACAATGA	3117	0.445	MNPLPPVYVFPIFFLFSDLVLRLSSAASGDCPSTIYCGNLGKLHFPFTTSHRKNCGMLAIHGCNDSNPNAPKTVLLKNEKLRVRYIDECAIFVTDDDLKSSLANGSCEAFGHNISVPPRSALGYFQIRNNITLYKCNSKHQGSPPKQFLNYTGCFKSKNEMIYFGTQNQENPPALAACSRVQLPVTNLAFSGDPFTFVAAEFPIEFHFSDDCKRCYFGKQGQCRLDDKGGTFCSKSRGKLQDGREVAVKHLFNHYHKRVEQFMNEIEILTRLRHRNLVSLYGCTSHQSRELLLVYEYIPNGTVASHLRGHTANPALLTWPKRIKIAIETASALAYLHASGIIHRDVKTNNILLDDNFCVKVADFGLSRLFPNDVSHVSTAPQGTPGYLDPEYHCCFRLTNKSDVYSFGVVLMELISSMPAVDIGRDTDEITLGNLAVRKIQRSEFEELVDPCLGIEKDSEVKKMLVAVGELAFQCLQRDRELRPSIDKVLEVLKKIEGGKEEGEDGGISEKSFHCGHLREIHFPFTNGNVPECGLLPIIGCGDPEDAPKLVQFQLGTNKWFKIESIDYKDRKIEIRIQDDEFQELLDQQSCSAFNYKLPIPPASSMLSFYVEQNITLFKCSYSEHEQYSFYKACDDYDIIYSGPIWPNNDFFNACTRVQMPVKTPFKLTAEILIEVEVSGPCLDCHNRGEQCRTDGKCIHYDPLPPAHAREDQRRNRMLIVIGFGIVYYGKLKDGREVAVKHLFERNYRRVEQFKNEIEILTRLRHGNLVSLYGCTSRHSRELLLVYEYIPNGTLGCHLHGNLAKPGSLPWPVRMRIAIETARALSYLHACDIIHRDVKTSNLLLDNHFCVKVADFGLSRLFPNFVTHVSTAPAGSPGYLDPEYHQCYQLTNKSDVYSFGVVLIELISSMPAIDITRSTDKIKLANLAVKKIQKSAFIELVDPSLGFESDNEVKRMIVSVAKLAFQCLQRDKELRPSMDEVLQVLQKIEIGKDGLEHLEFNGAGISDRGMHVSLPTSLYGDEVGSLKNLKPQRLHQTQ	1038

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere13g1702	1038	ProSiteProfiles	Protein kinase domain profile.	713	1000	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere13g1702	1038	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	833	845	IPR008271	GO:0004672\|GO:0006468
	Dere13g1702	1038	FunFam	Wall-associated receptor kinase-like 20	790	997	-	-
	Dere13g1702	1038	Pfam	Protein kinase domain	724	983	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere13g1702	1038	FunFam	Wall-associated receptor kinase-like 20	298	505	-	-
	Dere13g1702	1038	SUPERFAMILY	Protein kinase-like (PK-like)	230	495	IPR011009	-
	Dere13g1702	1038	Gene3D	Transferase(Phosphotransferase) domain 1	299	503	-	-
	Dere13g1702	1038	Gene3D	Transferase(Phosphotransferase) domain 1	791	995	-	-
	Dere13g1702	1038	Gene3D	Phosphorylase Kinase; domain 1	722	790	-	-
	Dere13g1702	1038	Gene3D	Phosphorylase Kinase; domain 1	229	298	-	-
	Dere13g1702	1038	Pfam	Protein tyrosine and serine/threonine kinase	237	492	IPR001245	GO:0004672\|GO:0006468
	Dere13g1702	1038	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	341	353	IPR008271	GO:0004672\|GO:0006468
	Dere13g1702	1038	ProSiteProfiles	Protein kinase domain profile.	206	496	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere13g1702	1038	SUPERFAMILY	Protein kinase-like (PK-like)	723	987	IPR011009	-
	Dere13g1702	1038	PANTHER	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4	720	1008	IPR044652	GO:0004672
	Dere13g1702	1038	SMART	serkin_6	230	493	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere13g1702	1038	SMART	serkin_6	716	990	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere13g1702	Dere-ChrDere13	23037543	23046126	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere13g1702	709	989	Receptor kinase-like Gene Family	AT1G25390	64.539	1.20e-118	376

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK_LRK10L-1	Dere13g1702		Pkinase	2.2e-41	CL0016