Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1694 ATGGCGGTACCCTCTTACTTCATTCTACTTGCTAGCTTTTTCTCCTTGGCTTCTCATTTGCTTCTTCTCGCTGAAGCATCCAGAAACCCAGATTTAGAAGCTCTCATGGCGTTCAAAGCCGCTTCTGATACACACAACAGGCTCTCATCCTGGAACTCCAGCATCGACCCATGTACCTGGGACTCCGTCTCTTGCCTTAAGAATCGAGTCTCGCGACTCGTTCTAGAAAATCTCGATCTCCATGGCTCTATCGAACCTTTAACTTCTCTGACTGAGCTTCGAGTTCTCAGCCTGAAGGGAAACCGTTTCTCCGGTCCCATTCCGAGTCTGTCCAACTTCACAGCTCTGAAGCTTCTGTTTCTGTCTCACAATGAGTTTTCCGGTCCGTTTCCGGCGTCAGTTACGTCGCTTCTCCGCTTGTACCGTCTCGATCTGTCTCACAACAACTTGTCCGGGAACATTCCAGCGACAGTCAACCATCTGACCCACCTTCTCACTCTCCGTCTCGACGAGAACCGGTTTTCCGGCCACATTACCATTCTGAACCTTCCCAATCTGCAAGACTTCAACGTCTCCGGTAACCGACTCTCCGGCGAAGTACCTAAATCGCTCTCGGGTTTCCCGGAGTCATCGTTCGCTCAAAACCCGTCTCTATGCGGAGCCCCACTGGTAAAATGTAAGAATACTAACGTAGTCCCGAGCAAACCCGGATCTGAGGGAGCCATTGCATCGCCGGTGATGCCGCGAAGCAATCCTTCAATGCCTGCGAACGAAGCCGCGCCCAGAACATCTTCTAACAGCACCCACCACCATAACGGAGCTCCGAAAATGAGCCCGGTAACTCTAATCGCCATTATTGTTGGCGATGTTTTGGTTCTGGCCGTGGTGTCCCTTCTTCTCTACTGCTATTTCTGTCGAAACTACACGGCGACATTGAAAGAGGGAAAAAGGTCGAATCTTCTGGAAAGCGAGAAGATAGTGTATTCATCGAGCCCTTACCCATCATCCCAACCCGGATTCGAGAGGGGTCAAATGGTATTCTTCGAAGGGGTGAGGAGGTTTGAGCTAGAGGACTTGCTTCGAGCTTCTGCGGAAATGCTGGGGAAAGGTGGGTTCGGGACGGCCTATAAAGCTGTTCTTGATGACGGCAATGTCGTTGCCGTGAAGAGGCTAAAGGACGCACAGATTAACGGGAAGAGAGAGTTCGAGCAGCACATGGAAATATTGGGAAGGCTAAGGCATCCCAATATTGTCAGCTTGAGAGCTTATTATTTTGCACGAGAGGAGAGGTTGCTGGTCTATGATTACATGACCAATGGTAGCTTGTTTTGGCTCCTTCATGGGAACCGAGGACCCGGGCGAACCCCTCTGGACTGGACCACGAGGCTCAAAATAGCAGCCGGCGTGGCGCGAGGTCTCGCCTTTATTCACAGCTCATGCAAGACCCTTAAGCTCACCCACGGTGACATCAAATCCTCAAACATCCTCATCGACAAGGACGGAAACGCACGCGTGTCAGATTTCGGGCTCTCCATCTTCGCAAGCCCAGCCACATCAGCTTCGGCTCCCAGATCCAACGGCTACCGTGCACCGGAAGCACTTGACGGTCGGAAACACACCCAGAAATCCGACGTGTACTCCTTCGGCGTTCTCCTCCTGGAGCTTCTCACCGGAAAGTGCCCCTCCGTGGTGGACGCCGGCGGTCCCGGCGGTGGGGTCGTGGACCTACCTCGGTGGGTCCAGTCGGTGGTGAGAGAGGAGTGGACGGCTGAGGTGTTCGATCTGGAGCTCATGAGGTACAAGGATATCGAAGAGGAAATGGTGGGGCTGCTTCAGATTGCCATGTCTTGTGCTGCGGTCGCTCCTGATCAACGGCCAAGGATAAGCCACGTGGTCAAGATGATTGAGGACATACGTGGCGTCGAGGTGTCGCCGTGTCATGACACGTTGGACTCGGTGTCTGATTCGCCGTCCTTGTCCGAAGATGCATGCGGAGGTAGCCAGTAA 2007 0.5316 MAVPSYFILLASFFSLASHLLLLAEASRNPDLEALMAFKAASDTHNRLSSWNSSIDPCTWDSVSCLKNRVSRLVLENLDLHGSIEPLTSLTELRVLSLKGNRFSGPIPSLSNFTALKLLFLSHNEFSGPFPASVTSLLRLYRLDLSHNNLSGNIPATVNHLTHLLTLRLDENRFSGHITILNLPNLQDFNVSGNRLSGEVPKSLSGFPESSFAQNPSLCGAPLVKCKNTNVVPSKPGSEGAIASPVMPRSNPSMPANEAAPRTSSNSTHHHNGAPKMSPVTLIAIIVGDVLVLAVVSLLLYCYFCRNYTATLKEGKRSNLLESEKIVYSSSPYPSSQPGFERGQMVFFEGVRRFELEDLLRASAEMLGKGGFGTAYKAVLDDGNVVAVKRLKDAQINGKREFEQHMEILGRLRHPNIVSLRAYYFAREERLLVYDYMTNGSLFWLLHGNRGPGRTPLDWTTRLKIAAGVARGLAFIHSSCKTLKLTHGDIKSSNILIDKDGNARVSDFGLSIFASPATSASAPRSNGYRAPEALDGRKHTQKSDVYSFGVLLLELLTGKCPSVVDAGGPGGGVVDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIAMSCAAVAPDQRPRISHVVKMIEDIRGVEVSPCHDTLDSVSDSPSLSEDACGGSQ 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1694 668 Pfam Protein kinase domain 365 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1694 668 SUPERFAMILY Protein kinase-like (PK-like) 365 635 IPR011009 -
Dere13g1694 668 ProSiteProfiles Protein kinase domain profile. 361 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1694 668 SUPERFAMILY L domain-like 38 222 - -
Dere13g1694 668 CDD STKc_IRAK 367 638 - -
Dere13g1694 668 Gene3D Ribonuclease Inhibitor 180 227 IPR032675 -
Dere13g1694 668 SMART serkin_6 361 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1694 668 Pfam Leucine rich repeat N-terminal domain 29 65 IPR013210 -
Dere13g1694 668 ProSitePatterns Protein kinases ATP-binding region signature. 367 389 IPR017441 GO:0005524
Dere13g1694 668 Gene3D Phosphorylase Kinase; domain 1 340 436 - -
Dere13g1694 668 MobiDBLite consensus disorder prediction 237 273 - -
Dere13g1694 668 Gene3D Transferase(Phosphotransferase) domain 1 437 651 - -
Dere13g1694 668 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 19 640 IPR046959 -
Dere13g1694 668 FunFam Nuclear pore complex protein NUP107 28 180 - -
Dere13g1694 668 MobiDBLite consensus disorder prediction 649 668 - -
Dere13g1694 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 485 497 IPR008271 GO:0004672|GO:0006468
Dere13g1694 668 FunFam pollen receptor-like kinase 1 334 436 - -
Dere13g1694 668 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 437 645 - -
Dere13g1694 668 MobiDBLite consensus disorder prediction 256 273 - -
Dere13g1694 668 Gene3D Ribonuclease Inhibitor 29 179 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1694 Dere-ChrDere13 22950365 22953488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1694 31 667 Receptor kinase-like Gene Family AT1G68400 68.308 0.0 844
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Dere13g1694 Pkinase 2.3e-43 CL0016