Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1691 ATGGGGACGGGTTCCAAGATGGATGGACCTTCTGTCCCATCAATTCGACGAGACCCATATGAGGTATTGTCCGTGTCAAGAGACGCAAATGATCAGGAAATAAAAACGGCCTACAGAAAGCTCGCTCTCAAATACCACCCTGACAAGAATGCTAACAATCCTGAAGCTTCAGAGTTATTTAAAGAGGTTGCATATTCGTACAATATCTTATCTGATCCAGAGAAGAGAAGGCAATATGACAGTGCAGGATTTGAGGCACTTGATGCTGATAGCTTGGACATGGAAATTGATCTCTCAAATCTTGGTACTGTTAACACGATGTTTGCTGCTTTATTCAGCAAGCTGGGTGTCCCTATCAAGACTACCATTTCAGCAAATGTTCTTGAAGAAGCCCTGAATGGCACAGTTACTGTCAGACCCCTTCCTATTGGAACATCAGTTAGTGGAAAGGTAGAGAAACAATGTGCTCATTTTTTTGGTGTCACAATAAATGAGCAGCAAGCTGACGCAGGGATTGTAGTAAGAGTTACTTCAACTTCACAAAGCAAATTCAAGTTGCTCTACTTCGAACATGATGCAAATGGTGGCTATGGTTTGGCATTGCAGGAAGATAGTGAGAAGACTGGCAAGGTGACATCTGCTGGCATGTATTTCTTACATTTTCAAGTGTACAGAATGGATTCAACTGTGAATGCATTAGCGATGGCCAAGGATCCTGAAGCTGCTTTCTTCAAAAGATTGGAAGGTCTTCAACCTTGTGAAGTCTCAGAATTGAAGCCTGGCACTCATATATTTGCTGTTTATGGAGATAACTTCTTTAAGACTGCTACCTATACAATTGAGGCACTTTGTGCAACTTCTTATGAGGATACCACGCAAAAGCTCAAGGACATTGAAGCTCAAATTCTAAGAAAGAGGAATGATTTGCGCCAATTTGAATCAGAATACAGAAAGGCATTAGCACGCTACCAAGAAGTGACTGAAAGATACACCCGAGAAAAACAGTCAGTGGATGAACTTCTGAAACAAAGAGACAACATCCATTCTACCTTCACTGTCGCCAAGTCAATCTCTATTAGTGGGAGCAGTAGTAATTTAAGTAATGGAAGTAGTAGCAAAATCACCGGTGAAGATTCCAGGGTAGAAAGCCCTGGAGAAGATGGAAGCTTAGATGGCAAGGATAAATCAGGCAAAAAGAAATGGTTTAACCTCAATCTTAAGGGCTCTGATAAGAAAAATTAA 1242 0.4122 MGTGSKMDGPSVPSIRRDPYEVLSVSRDANDQEIKTAYRKLALKYHPDKNANNPEASELFKEVAYSYNILSDPEKRRQYDSAGFEALDADSLDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGKVEKQCAHFFGVTINEQQADAGIVVRVTSTSQSKFKLLYFEHDANGGYGLALQEDSEKTGKVTSAGMYFLHFQVYRMDSTVNALAMAKDPEAAFFKRLEGLQPCEVSELKPGTHIFAVYGDNFFKTATYTIEALCATSYEDTTQKLKDIEAQILRKRNDLRQFESEYRKALARYQEVTERYTREKQSVDELLKQRDNIHSTFTVAKSISISGSSSNLSNGSSSKITGEDSRVESPGEDGSLDGKDKSGKKKWFNLNLKGSDKKN 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1691 413 FunFam Chaperone protein dnaJ 16 3 100 - -
Dere13g1691 413 CDD DnaJ 18 72 IPR001623 -
Dere13g1691 413 MobiDBLite consensus disorder prediction 1 20 - -
Dere13g1691 413 Coils Coil 288 343 - -
Dere13g1691 413 MobiDBLite consensus disorder prediction 360 413 - -
Dere13g1691 413 Pfam DnaJ domain 18 80 IPR001623 -
Dere13g1691 413 Gene3D DnaJ domain 10 98 IPR036869 -
Dere13g1691 413 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 4 412 - -
Dere13g1691 413 ProSiteProfiles dnaJ domain profile. 18 83 IPR001623 -
Dere13g1691 413 MobiDBLite consensus disorder prediction 360 378 - -
Dere13g1691 413 ProSitePatterns Nt-dnaJ domain signature. 60 79 IPR018253 -
Dere13g1691 413 PRINTS DnaJ domain signature 75 94 IPR001623 -
Dere13g1691 413 PRINTS DnaJ domain signature 38 53 IPR001623 -
Dere13g1691 413 PRINTS DnaJ domain signature 55 75 IPR001623 -
Dere13g1691 413 PRINTS DnaJ domain signature 20 38 IPR001623 -
Dere13g1691 413 SMART dnaj_3 17 75 IPR001623 -
Dere13g1691 413 SUPERFAMILY Chaperone J-domain 17 87 IPR036869 -
Dere13g1691 413 MobiDBLite consensus disorder prediction 379 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1691 Dere-ChrDere13 22896252 22906170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1691 11 90 C2H2 Transcription Factor Family AT1G74250 41.176 5.71e-12 65.5