Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1684 ATGTCTGCTGTTACAAAGAGAGATAAGTTGGGTTCCAATGAAGAAGAGAGTGAGCTGAGAAGAGGCCCTTGGACTCTTGAAGAAGACAGCCTTCTCATTCACTATATTGCCCGCCATGGTGAAGGTCGTTGGAATATGTTGGCCAAAAGTGCAGGATTGAAGAGGAATGGAAAGAGCTGCAGACTCAGATGGCTTAATTACTTGAAACCAGATATCAAGCGAGGGAATCTAACCCCACAAGAGCAGCTCGTGATCCTTGAACTCCATTCTAGGTGGGGTAACAGATGGTCAAAAATTGCTCAGCATCTGCCAGGAAGAACTGACAATGAGATCAAGAACTACTGGAGAACAAGGGTGCAGAAGCAAGCACGCCAACTTAACATCGAATCTGGAAGCAAGAAATTCATCGATGCGATTCGGTGTTTCTGGATGCCAAGATTGGCTCAAAAGGTGGAACAGAAACAGAACTCTCCCTCTAGTACCTCCTACTCTTCTTTCACAGACACGAACCTTCAAGTTTCTCCAGAATCTTCAATGATGTCACACAACAGCTCTGTTATACCTTCTCTGTCTACTCCATCATTACAACCAGCAAACCATTCCAGCACCCTCTGCTCCATCCCCAGCAATTTTCCCTCTGATTCTATGCAATTCTCGCAGCTTCTGGAAACTTCAGAACTTCCAGCAAGTCCCTGTTATATGTTTGAGAACAATGGTTACTACAGCAATCCAAATCAGGAAAACTTGTGGGTGAATAATAGCAATGGCTGTGAAATGGATGGTGTGAACCTGCAGGAACCAGTAGTGTCAGGGATGGGAACTTATGACATGTTGCAGTTTGATTATTGTCAGCCAGCAGGAGAAAGTGAGTGGGTGCTAGGAAACATGGCAGATGCTTTATGGAATATGGATGCTATGTGA 921 0.4473 MSAVTKRDKLGSNEEESELRRGPWTLEEDSLLIHYIARHGEGRWNMLAKSAGLKRNGKSCRLRWLNYLKPDIKRGNLTPQEQLVILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARQLNIESGSKKFIDAIRCFWMPRLAQKVEQKQNSPSSTSYSSFTDTNLQVSPESSMMSHNSSVIPSLSTPSLQPANHSSTLCSIPSNFPSDSMQFSQLLETSELPASPCYMFENNGYYSNPNQENLWVNNSNGCEMDGVNLQEPVVSGMGTYDMLQFDYCQPAGESEWVLGNMADALWNMDAM 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1684 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 68 IPR017930 -
Dere13g1684 306 FunFam Myb transcription factor 21 73 - -
Dere13g1684 306 ProSiteProfiles Myb-like domain profile. 16 68 IPR001005 -
Dere13g1684 306 CDD SANT 78 117 IPR001005 -
Dere13g1684 306 SUPERFAMILY Homeodomain-like 19 115 IPR009057 -
Dere13g1684 306 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 36 45 IPR001345 GO:0003824
Dere13g1684 306 CDD SANT 23 68 IPR001005 -
Dere13g1684 306 SMART sant 73 121 IPR001005 -
Dere13g1684 306 SMART sant 20 70 IPR001005 -
Dere13g1684 306 MobiDBLite consensus disorder prediction 1 21 - -
Dere13g1684 306 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 15 191 IPR044676 GO:0003700|GO:0006355|GO:0043565
Dere13g1684 306 MobiDBLite consensus disorder prediction 174 194 - -
Dere13g1684 306 Pfam Myb-like DNA-binding domain 74 117 IPR001005 -
Dere13g1684 306 Pfam Myb-like DNA-binding domain 21 68 IPR001005 -
Dere13g1684 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 123 IPR017930 -
Dere13g1684 306 FunFam MYB transcription factor 78 141 - -
Dere13g1684 306 Gene3D - 77 122 - -
Dere13g1684 306 Gene3D - 21 73 - -
Dere13g1684 306 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1684 Dere-ChrDere13 22802333 22803507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1684 16 163 MYB Transcription Factor Family AT1G68320 79.054 4.13e-84 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere13g1684 Myb_DNA-binding 5.1e-14 CL0123