Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1683 ATGAGCAAGGTGGAAAATCGCACCTTGACCAATCAAGCTTTAATCATGCCTTTCTCCAATGGCAGCCTTTTGGATCAGCAGCTTAATTTCCCACAGATTCAGTCATCAGAAAGCTTAGGAGAGAATTCTTCTTCTCCTTCTGCAAGTTTTCCAGAAACGAATAAGAAAGCAGCTGGGTTCAAAAGGAAGAGAAACAATAACAGAGTGGAAGAGAAACCAAAAGAAGTAATCCATGTAAGGGCAAAAAGAGGCCAAGCTACTGATAGCCACAGTTTAGCAGAACGGGTGAGAAGAGAGAAAATCAATGAGAAGCTGAGATGTTTGCAGGATTTGGTTCCTGGGTGCTACAAGGCAATGGGAATGGCAGTTATGTTAGATGTGATCATAAACTATGTTCTTTCCCTACAGCAACAGATTGAGTTTCTTTCCATGAAGCTCTCTGCAGCAAGTATGTATTTTGATTTCAACACCTGGGAGATAGAAACCATCGAAGCCATGCAGAGGAGTGGTAGCACCGATGGAATCCAAGGGATGGAAAGGACAACAGAAGGTTACGGAGGCTTTGCTTATTGCAACCCTACATGGCCTCTTCAATGA 597 0.4305 MSKVENRTLTNQALIMPFSNGSLLDQQLNFPQIQSSESLGENSSSPSASFPETNKKAAGFKRKRNNNRVEEKPKEVIHVRAKRGQATDSHSLAERVRREKINEKLRCLQDLVPGCYKAMGMAVMLDVIINYVLSLQQQIEFLSMKLSAASMYFDFNTWEIETIEAMQRSGSTDGIQGMERTTEGYGGFAYCNPTWPLQ 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1683 198 MobiDBLite consensus disorder prediction 56 74 - -
Dere13g1683 198 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 83 154 IPR036638 GO:0046983
Dere13g1683 198 MobiDBLite consensus disorder prediction 35 74 - -
Dere13g1683 198 Gene3D - 85 148 IPR036638 GO:0046983
Dere13g1683 198 SMART finulus 91 141 IPR011598 GO:0046983
Dere13g1683 198 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 41 161 IPR024097 GO:0006355
Dere13g1683 198 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 85 135 IPR011598 GO:0046983
Dere13g1683 198 MobiDBLite consensus disorder prediction 35 52 - -
Dere13g1683 198 CDD bHLH_AtBPE_like 75 156 - -
Dere13g1683 198 Pfam Helix-loop-helix DNA-binding domain 89 113 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1683 Dere-ChrDere13 22780911 22782117 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1683 15 180 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G25330 55.294 4.77e-54 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere13g1683 HLH 5.9e-05 No_clan