Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1668 ATGAAACTAAAGAACCGAAGCGGAGGTTTTTGGAATTCTAAATTTGGGTTCATGACTTCTGCAAAGAACGCAGCCAACGCCGTTGGCGGCAAAACCGCCAGAGCCTGCGACAGCTGCATAAGGAAGCGTGCTCGCTGGTACTGTGCCGCCGACGATGCCTTCCTCTGCCAGTCTTGTGACTCTCTGGTTCACTCCGCCAATCCATTGGCCCGTCGACACGAGAGGCTCCGCCTGAAAACGGCGTCGTTCAAATCCTCCTCCTCCTCATCCTCTGACGTCGTCGTTCCGGCATCGGTCGATCTCAGTTTGGCGCCCTCGTGGCCCAGAGGGTTCACCAAGAAAGCTCGCACGCCTCGACATGGGAAGAAACACCCTTTCACCAATCTTCGGACACCCAGAGGGCTTGACGACCCCACCAGGAACCCCTTTCATCTGGTGCCGGAAGTGGGTTCCGATGAATATTCCAATTCCCACGACGAGAACGAAGAGCAGCTTCTTTATCGGGTACCCATATTCGAACCGTTCGTAGCCGAGCTATGTACTCCTCCATCTTCTGCGACCTCAGCGGAAGCAGCGACGGCAGCCATGGGTGGTTGTAACGACATGGACAATAAGGAGACTAAGCAATCCGAAAGCAAGGTTTTATTGGGAAATAACAATAATGGTGTGGAAAATTTACATGGGTTTCTTCCATCCGAAATGGAACTTGCAGAGTTCGCGGCAGATGTTGAGAGTTTACTGGGCAGCGGACTGGAGAATGAGTGGATAGGCATGGATGATTTGGGGTTAATTGACAGTAAAGAGGAGGAATCGAGGGAGTGTTCTGTGGGTAGTGAAAAAGTGAAGATTGAGATTGATCAGATGGAGATGGGATTCAGAGAACCATTTGAACTGAGCTTTCATTATGAGTCTCCCGCAACATGTGAACAAGTGGAGGAGGAGAAGAAGGTGGCTAGTTTGGATACGGCTAAAGCGATGACTAATAATGACGGAGAATTCAAAGGGAATAATAATCAGAGAAAGAGGAAGATATTGCTGCAGCTGGATTATGAAGCAATCATTTCTGCTTGGGCTTACCAAAAATCTCCATGGACAACTGGTGATAAACCAGACTTCGACCCAGACGAGTGTTGGCCTGATTGCATGGGGTCGTGTGGAATGGAGCTACACCAACCATATTATGGGGAAATGGGAGGATATGGAGGGCACACAGGGACGGGAGACGGGGGAAGAGAGGCGAGGGTGTCGAGGTACAGAGAGAAGAGGAGGACGAGGTTGTTCTCGAAGAAAATAAGGTACGAGGTTCGGAAATTGAATGCAGAGAAGAGACCCAGAATGAAAGGTAGGTTTGTGAAGAGAGCCTCCTTCGCCGTGGCAGCACCACCTGCTTTTCCTTTGCTCAACAAATGA 1410 0.5021 MKLKNRSGGFWNSKFGFMTSAKNAANAVGGKTARACDSCIRKRARWYCAADDAFLCQSCDSLVHSANPLARRHERLRLKTASFKSSSSSSSDVVVPASVDLSLAPSWPRGFTKKARTPRHGKKHPFTNLRTPRGLDDPTRNPFHLVPEVGSDEYSNSHDENEEQLLYRVPIFEPFVAELCTPPSSATSAEAATAAMGGCNDMDNKETKQSESKVLLGNNNNGVENLHGFLPSEMELAEFAADVESLLGSGLENEWIGMDDLGLIDSKEEESRECSVGSEKVKIEIDQMEMGFREPFELSFHYESPATCEQVEEEKKVASLDTAKAMTNNDGEFKGNNNQRKRKILLQLDYEAIISAWAYQKSPWTTGDKPDFDPDECWPDCMGSCGMELHQPYYGEMGGYGGHTGTGDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAVAAPPAFPLLNK 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1668 469 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 25 454 - -
Dere13g1668 469 Pfam B-box zinc finger 33 75 IPR000315 GO:0008270
Dere13g1668 469 SMART bboxneu5 31 78 IPR000315 GO:0008270
Dere13g1668 469 CDD Bbox1_BBX-like 35 78 - -
Dere13g1668 469 MobiDBLite consensus disorder prediction 113 127 - -
Dere13g1668 469 ProSiteProfiles CCT domain profile. 411 453 IPR010402 GO:0005515
Dere13g1668 469 ProSiteProfiles Zinc finger B-box type profile. 31 78 IPR000315 GO:0008270
Dere13g1668 469 MobiDBLite consensus disorder prediction 110 140 - -
Dere13g1668 469 Pfam CCT motif 411 453 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1668 Dere-ChrDere13 22562782 22565092 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1668 22 453 C2C2-CO-like Transcription Factor Family AT1G25440 45.861 4.34e-105 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Dere13g1668 CCT 1.6e-17 CL0281