Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1665 ATGAATGTCTGCAGAAAGGTGAAGCAAGGGCCTTATCCTATTCAAGAGGAGTCCATAATGTCCAGAAAACTGCGCATAATATATGACGACCATGATGCCACAGACTCATCTTCAAGCGACGATGAAGGAGAGTGGATAAAGAAGCCGAAAAGGATAAAACGAATAGTTCGTGAGCTTGCTCTTCCTCTTCTTCCAGAGAAGCCCAAAACTGTTGAAACTGATAGCTCTTGTCAAGAGACTAACAATGGAGGTGCGGAAGGTAAAGAATGTGAACCAGTCAAAGTCAGGTCACCAAAGAGACGTTCATCTTCAAAATACAGAGGCGTTCGACTCAGAAACTCAGGTAAATGGGCTGCTGAGATACGTCATCCTATTCAGGGTCGTAAATGGTTGGGCACTTTTAATACTCCAGAGGAGGCATCTCAAGCCTATGAGGCCAAAAGAATGGAGTTTGAAGCAATGGTCAAGTCTCTACCTAGTTCTTGTTCTGCAGCCGCCATGGCTGACTCTAAAAAAGGCATCCCTTCTGCTACTGCTTCTTCTGCTTCATCTTATTCGGAGGACTCACAGAGTGTCTTTTCACAGTCATCACCGCCCTCTGTCCTCGAAGTCTATACTTCAATTGAGAATGATCACATTTCAAGCAACGAAGCCAATGAATTTGAGTCCGGATTTGCAGCTTTACAAATACCTGATTTGAGTTTGTCGGCATCAGCACCTTCATTTTTACCTGAGGATGGCAAGATCTCTGGCAAAGAAGCCAATGGTTTGGAGTCTGAACTTGGAGCAACCTTAGAAATACCTGATTTGAGTATTTTGAAGGAGCCATTGGCAGCTTGTTCGGAGCCCAGCCTGCTTGAGCTGGATTATTTAATGGTAGATGATTTTGAGCAGAGTTTTGAAGATGATGATCTTTGTGGCTTGCTGGGCATTCAACTTGGCGGGTTTGATGACGATATGCCAAGTGAGCTTCCTGACTTCGATTTCGATTTCGACGATTTTGGTGCAGATGATGAGTTTGCTGGTTGGATTGAGGAGCCCCTCAACATACCTTGCGCATAA 1062 0.4454 MNVCRKVKQGPYPIQEESIMSRKLRIIYDDHDATDSSSSDDEGEWIKKPKRIKRIVRELALPLLPEKPKTVETDSSCQETNNGGAEGKECEPVKVRSPKRRSSSKYRGVRLRNSGKWAAEIRHPIQGRKWLGTFNTPEEASQAYEAKRMEFEAMVKSLPSSCSAAAMADSKKGIPSATASSASSYSEDSQSVFSQSSPPSVLEVYTSIENDHISSNEANEFESGFAALQIPDLSLSASAPSFLPEDGKISGKEANGLESELGATLEIPDLSILKEPLAACSEPSLLELDYLMVDDFEQSFEDDDLCGLLGIQLGGFDDDMPSELPDFDFDFDDFGADDEFAGWIEEPLNIPCA 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1665 353 ProSiteProfiles AP2/ERF domain profile. 105 161 IPR001471 GO:0003700|GO:0006355
Dere13g1665 353 SUPERFAMILY DNA-binding domain 104 151 IPR016177 GO:0003677
Dere13g1665 353 SMART rav1_2 105 165 IPR001471 GO:0003700|GO:0006355
Dere13g1665 353 PRINTS Ethylene responsive element binding protein signature 127 143 IPR001471 GO:0003700|GO:0006355
Dere13g1665 353 PRINTS Ethylene responsive element binding protein signature 106 117 IPR001471 GO:0003700|GO:0006355
Dere13g1665 353 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 21 231 - -
Dere13g1665 353 CDD AP2 104 146 IPR001471 GO:0003700|GO:0006355
Dere13g1665 353 MobiDBLite consensus disorder prediction 66 108 - -
Dere13g1665 353 Gene3D AP2/ERF domain 104 155 IPR036955 GO:0003700|GO:0006355
Dere13g1665 353 MobiDBLite consensus disorder prediction 174 197 - -
Dere13g1665 353 Pfam AP2 domain 104 153 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1665 Dere-ChrDere13 22530375 22531436 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1665 22 352 AP2-EREBP Transcription Factor Family AT1G68550 36.119 8.32e-37 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere13g1665 AP2 1.7e-08 CL0081