Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1653 ATGAAGATTTTTGTGAAGACTCTTAAAGGCACTAACTTCGAAATCGAAGTGAAGCCTGAAGATACGGTTGCTGAAGTGAAGAAACATATAGAAACTGTCCAGGGTGCAGAAGTCTATCCTGCTGCTCAGCAAATGCTTATTCATCAGGGGAAAGTTCTCAAAGATGGTACTACCTTGGAGGAAAATAAAGTAGCTGAAAACAGTTTTGTTGTAATTATGCTATCAAAGAGTAAGAGCTCATCAGGTGAGGGATCTACTGCTGCTGCAACTTCTGTGAAGGCTCCACAGACAAGTGCAGCTCCTTCATCGATCCCCGTGTCAACAGCACCTCAAGCTCCTGCTGCAGCTGGGGCACCGCCTGTATCTGTTCCTGCACCGGCATCAGCTCCAGTGCCAGCTCCTGCTTCTACAACTCCTGGCCCTGCTGTGCCAGGGTCTGATATCTATGGGCAGGCAGCATCTAATCTTGTTGCTGGAAGCAACTTGGAGGGAACAATTCAGCAAATTCTTGATATGGGTGGTGGGAGCTGGGATAGGGATACTGTTGTCCGTGCTCTGCGTGCTGCCTACAATAACCCTGAGAGAGCTGTTGAATATTTGTATACAGGTATCCCAGAGCAAGCTGAAGCTCCACCTGTGGCTCGGGTGCCTGGAAGTGGTGTACAAGCTACAAATCCTCCAGTTGCAACTCAACAAACAACACAACAAGCACCTGTTCCTTCAAGTGGACCTAATGCTAATCCTTTAGATCTCTTTCCCCAGGGCCTCCCAAATGTTGGTGCTGGTGCAGCTGGTGCAGGCAATCTAGATTTTCTGCGCAACAGTCAACAGTTCCAAGCTTTGAGAGCCATGGTGCAGGCTAATCCACAAATATTGCAGCCTATGCTTCAAGAGCTTGGGAAACAAAATCCTCATCTCATGAGATTGATTCAAGAGCATCAAGCTGACTTCCTTCGCCTGATAAATGAACCTGTGGAAGGTGGCGAGGGGAATATATTGGGGCAGCTGGCTGGTGCCATGCCACAAACAGTAGCTGTCACCCCTGAGGAGCGCCAAGCGATTGAACGTCTTGAAGCAATGGGATTCGATCGAGCGCTTGTCTTGGAGGTGTACTTTGCTTGTAACAAAAATGAAGAATTGGCTGCCAACTACCTTTTAGATCACATGCATGAGTTTGAGGAATGA 1185 0.4793 MKIFVKTLKGTNFEIEVKPEDTVAEVKKHIETVQGAEVYPAAQQMLIHQGKVLKDGTTLEENKVAENSFVVIMLSKSKSSSGEGSTAAATSVKAPQTSAAPSSIPVSTAPQAPAAAGAPPVSVPAPASAPVPAPASTTPGPAVPGSDIYGQAASNLVAGSNLEGTIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPPVARVPGSGVQATNPPVATQQTTQQAPVPSSGPNANPLDLFPQGLPNVGAGAAGAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQADFLRLINEPVEGGEGNILGQLAGAMPQTVAVTPEERQAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHMHEFEE 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1653 394 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Dere13g1653 394 FunFam UV excision repair protein RAD23 homolog 155 205 - -
Dere13g1653 394 SMART CBM 267 310 IPR006636 -
Dere13g1653 394 MobiDBLite consensus disorder prediction 79 146 - -
Dere13g1653 394 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Dere13g1653 394 SMART ubq_7 1 75 IPR000626 GO:0005515
Dere13g1653 394 NCBIfam UV excision repair protein Rad23 1 393 IPR004806 GO:0006289
Dere13g1653 394 MobiDBLite consensus disorder prediction 213 242 - -
Dere13g1653 394 Gene3D - 1 80 - -
Dere13g1653 394 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 160 203 IPR015940 -
Dere13g1653 394 CDD Ubl_Rad23 1 74 - -
Dere13g1653 394 CDD UBA1_Rad23_plant 156 205 - -
Dere13g1653 394 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 383 - -
Dere13g1653 394 FunFam UV excision repair protein RAD23 homolog 341 389 - -
Dere13g1653 394 SMART uba_6 162 202 IPR015940 -
Dere13g1653 394 SMART uba_6 350 387 IPR015940 -
Dere13g1653 394 Pfam UBA/TS-N domain 165 200 IPR015940 -
Dere13g1653 394 Pfam UBA/TS-N domain 350 385 IPR015940 -
Dere13g1653 394 SUPERFAMILY UBA-like 159 211 IPR009060 GO:0005515
Dere13g1653 394 SUPERFAMILY UBA-like 331 392 IPR009060 GO:0005515
Dere13g1653 394 MobiDBLite consensus disorder prediction 79 109 - -
Dere13g1653 394 FunFam UV excision repair protein RAD23 1 80 - -
Dere13g1653 394 Gene3D - 260 325 IPR036353 GO:0003684|GO:0006289|GO:0043161
Dere13g1653 394 PRINTS DNA repair protein Rad23 signature 361 375 IPR004806 GO:0006289
Dere13g1653 394 PRINTS DNA repair protein Rad23 signature 376 391 IPR004806 GO:0006289
Dere13g1653 394 PRINTS DNA repair protein Rad23 signature 344 360 IPR004806 GO:0006289
Dere13g1653 394 PRINTS DNA repair protein Rad23 signature 295 317 IPR004806 GO:0006289
Dere13g1653 394 Gene3D - 342 389 - -
Dere13g1653 394 MobiDBLite consensus disorder prediction 117 139 - -
Dere13g1653 394 Pfam XPC-binding domain 269 324 IPR015360 GO:0003684|GO:0006289|GO:0043161
Dere13g1653 394 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
Dere13g1653 394 Gene3D - 155 205 - -
Dere13g1653 394 FunFam UV excision repair protein RAD23 B 260 325 - -
Dere13g1653 394 SUPERFAMILY XPC-binding domain 265 331 IPR036353 GO:0003684|GO:0006289|GO:0043161
Dere13g1653 394 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 347 388 IPR015940 -
Dere13g1653 394 MobiDBLite consensus disorder prediction 223 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1653 Dere-ChrDere13 22426746 22433573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1653 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.541 2.18e-09 53.5