Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1641 ATGCAAAGCTTCAAGACGGCTCACTCGAGCTCCCAACAACTCTATTGCCACCCCTCCTTCTTTCTTCGGGGAGACGACACTGGCCGAAATTCAACGCGTTTCTCGGATCTTGGACAGCTTCAACATTCCACAGCTCCCTTTCACCATGACGATGCTGTTGATTTAAGCTCAAGCTCTATGTTTTCTGTAAAGTCGACCAATGTCGCCGTTGTTCCCGTTAACTTGCAGTACAGTACATTGAACACGAACATTGGTTCTTCGGAAATTGCTTCAACAGGGGCTGGGTGCCTCGATACAGGGCAGCATCTAATGTATCAGAAGGGAACCACGACTGCGGGCGCCACTGTGCCGGTAGGGAACGGGCATATCGAGAATTGGGGCGATTCCGGCATGGTAGACAATAGCCAACACACTGATACTTCTACAGATATCGACACCGATGATAAAAACCAATGTAATAGGGTACAGCATGGGGGAGTTGTAGTTGTGGATTCCATGGATCAACCTAAGGCCAAAGCTGAAGACCAGAAGACCCTTCGTAGGCTCGCACAGAATCGAGAGGCTGCGAGGAAGAGTCGATTAAGGAAAAAGGCATATGTACAGCAGTTGGAGAATAGTCGTCTTAGGCTCGCACAACTAGAGCAAGAGCTCCAACGCGCACGTCAGCAGGGAATACTTGTTGCAACTGGGTTTCCCGGGGATCATGGTCATTCAGTGGTTGGAAATGGTGCCTTAGCATTTGACATGGACTATGCACGCTGGGTTGATGAGCATCAACAGCTGATAAATGACCTAAGATCGGCTGTTAATTCTCAAATGGGAGACAATGAACTGCATCTGGTAGTCGATGGTGTGATGGCACATTACGATGAAGTATTTAGGTTAAAGAGCATAGGGGCAAAGGCTGATGTATTTCACATGCTTTCTGGTATGTGGAAGACTCCTGCAGAAAGATGTTTCATGTGGTTAGGTGGATTCCGATCATCTGAACTTCTCAAGATAGTGAGGAACCACCTTGAGCCATTGACAGACCAGCAATTGATGGGCATATATAATCTGCAGCAGTCATCGTTGCAGGCCGAAGATGCTTTGACACAAGGTATGGATGCATTACAACAATCACTTTCAGAGACGCTTTCCTCAACCTCCCTCGGGCCCACCGGTTCTGGGAATGTGGCTGATTACATGGGCCAAATGGCCATTGCTATGGGCAAACTTGCTGCGTTGGAGAATTTTCTTCATCAGGCTGACCTCTTGAGGCAACAAACTCTGCAACAGTTGCAAAGAATCTTAACCACACGACAAGCTGCTCGTGCCCTCCTTGTCATAAACGACTACATTTCACGACTCCGAGCACTTAGTTCATTATGGTTAGCGCGCCCTCGAGAGTAG 1392 0.4813 MQSFKTAHSSSQQLYCHPSFFLRGDDTGRNSTRFSDLGQLQHSTAPFHHDDAVDLSSSSMFSVKSTNVAVVPVNLQYSTLNTNIGSSEIASTGAGCLDTGQHLMYQKGTTTAGATVPVGNGHIENWGDSGMVDNSQHTDTSTDIDTDDKNQCNRVQHGGVVVVDSMDQPKAKAEDQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLRLAQLEQELQRARQQGILVATGFPGDHGHSVVGNGALAFDMDYARWVDEHQQLINDLRSAVNSQMGDNELHLVVDGVMAHYDEVFRLKSIGAKADVFHMLSGMWKTPAERCFMWLGGFRSSELLKIVRNHLEPLTDQQLMGIYNLQQSSLQAEDALTQGMDALQQSLSETLSSTSLGPTGSGNVADYMGQMAIAMGKLAALENFLHQADLLRQQTLQQLQRILTTRQAARALLVINDYISRLRALSSLWLARPRE 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1641 463 Gene3D - 176 226 - -
Dere13g1641 463 ProSiteProfiles DOG1 domain profile. 244 460 IPR025422 GO:0006351|GO:0043565
Dere13g1641 463 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 180 195 IPR004827 GO:0003700|GO:0006355
Dere13g1641 463 MobiDBLite consensus disorder prediction 133 152 - -
Dere13g1641 463 SMART brlzneu 173 226 IPR004827 GO:0003700|GO:0006355
Dere13g1641 463 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 175 219 IPR004827 GO:0003700|GO:0006355
Dere13g1641 463 FunFam BZIP family transcription factor 176 225 - -
Dere13g1641 463 CDD bZIP_HBP1b-like 177 229 - -
Dere13g1641 463 Coils Coil 196 223 - -
Dere13g1641 463 Pfam bZIP transcription factor 176 215 IPR004827 GO:0003700|GO:0006355
Dere13g1641 463 Pfam Seed dormancy control 262 336 IPR025422 GO:0006351|GO:0043565
Dere13g1641 463 PANTHER TRANSCRIPTION FACTOR TGA9 122 463 - -
Dere13g1641 463 SUPERFAMILY Leucine zipper domain 177 220 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1641 Dere-ChrDere13 22328237 22331553 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1641 3 463 bZIP Transcription Factor Family AT1G68640 62.712 0.0 515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Dere13g1641 DOG1 2.5e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere13g1641 13 22328237 22331553 Dere13g1641 13 22328237 22331553 ECH