Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1630 ATGAATTTCACTCACAAAACGCAGCCCCAGACGAAGATGGAGTTATCTGACTACATTCAAGCATTAGAAGCAGAACGCCTTAAAATCCAAGTCTTTTCCAAAGAGCTTCCTCTTTCCTTGGAGCTCGTTACGCAAGCCATTGAAGCGTGTAGGCTACAGTTGTCTGGAACAACGACGACGTCGGAGTATAATTTAAATGGGCAATCGGAGTCTTCGGGGCAGACATCATCGGAAGGCCCTGTTTTGGAGTTTATTCCTACGAAGAGAAGGGCACCCTCGGATTGTGGAGAAGACGATGAAGATGAGCAACATTCGCATAAACCCAAGATTGCAAAGGATAAGGAAGCTGATAAGAGGAAATCCGATTGGCTTAGATCCGTACAGCTCTGGAGTCCACCATCCCCAGTTAAAGAGGAGGTTCCTAAGAAAGCATCGGTGTTGGAAGTGAAAAGAAATGGAGGTGCTTTCCAGCCATTTCACAAAGAACCAAGTATTGGAAAGGCTAATGCATTGACTGGTAAAGAACCATCTTCACCGTTGCCGCCACCAACAGCCGTCGCCGCGGCGAGAGGACTCCCTGAAAGCAATAAAAAAGAGGAACAAGAAGGACAGGCTCAAAGGAAGCAAAGACGATGCTGGTCGCAGGAGTTACATAAACGATTTTTGCATGCCCTTCAACAACTTGGTGGAGCAGATTCTGCCACACCAAAACAGATAAGAGAATTAATGAAAGTTGATGGCCTTACAAATGATGAAGTGAAGAGTCATTTACAGAAATATCGATTGCACACGAGGAGACCAAGTTCAATGATTCAAAACAACGGTAGTTCTCAGACGGCTCCTTTTGTGCTCGTGGGAAACATTATTGTGCAACCGCCGGAATATGCTTCAAGAGCACCAGGAGATGCACCGCCGTCTGGGATTTATGCGCCGGTGGCGTCACATGCTGCAGCAGTGCCACGTGCGCCGGTTCCGGCGAAGGCTCAGTGTAGGCAATCAGAGCATTGGGAGGATTCAAATTCAGAAGAAAGGGGTAATCACAGTGAGGTGGCAGATCATTCAAATTCACCAACTTCATCTTCCTCCACACATACCACGACTGCTTCTCTTGGCTATTCAATTTGA 1125 0.4693 MNFTHKTQPQTKMELSDYIQALEAERLKIQVFSKELPLSLELVTQAIEACRLQLSGTTTTSEYNLNGQSESSGQTSSEGPVLEFIPTKRRAPSDCGEDDEDEQHSHKPKIAKDKEADKRKSDWLRSVQLWSPPSPVKEEVPKKASVLEVKRNGGAFQPFHKEPSIGKANALTGKEPSSPLPPPTAVAAARGLPESNKKEEQEGQAQRKQRRCWSQELHKRFLHALQQLGGADSATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSSMIQNNGSSQTAPFVLVGNIIVQPPEYASRAPGDAPPSGIYAPVASHAAAVPRAPVPAKAQCRQSEHWEDSNSEERGNHSEVADHSNSPTSSSSTHTTTASLGYSI 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1630 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 205 265 IPR017930 -
Dere13g1630 374 MobiDBLite consensus disorder prediction 331 350 - -
Dere13g1630 374 MobiDBLite consensus disorder prediction 90 124 - -
Dere13g1630 374 MobiDBLite consensus disorder prediction 154 212 - -
Dere13g1630 374 MobiDBLite consensus disorder prediction 193 212 - -
Dere13g1630 374 NCBIfam myb-like DNA-binding domain, SHAQKYF class 208 263 IPR006447 GO:0003677
Dere13g1630 374 MobiDBLite consensus disorder prediction 351 374 - -
Dere13g1630 374 MobiDBLite consensus disorder prediction 60 126 - -
Dere13g1630 374 Pfam Myb-like DNA-binding domain 210 261 IPR001005 -
Dere13g1630 374 MobiDBLite consensus disorder prediction 315 374 - -
Dere13g1630 374 MobiDBLite consensus disorder prediction 60 81 - -
Dere13g1630 374 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 7 344 IPR044787 GO:0003700|GO:0006355
Dere13g1630 374 FunFam Myb family transcription factor 207 265 - -
Dere13g1630 374 Gene3D - 207 265 - -
Dere13g1630 374 SUPERFAMILY Homeodomain-like 206 266 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1630 Dere-ChrDere13 22125096 22126701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1630 1 313 G2-like Transcription Factor Family AT1G68670 48.955 5.20e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Dere13g1630 Myb_DNA-binding 2.3e-06 CL0123