Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1627 ATGGATGCGAGTAGTTGCATAGATGAAAGCACCACGAGTGATTCAGTGTCTATACCCCTTTCTCCCGCGACTACTCTGTCGCCGTTCACCGTGACACCTCAGAAGTCACCGCCGCCACCGCCGCCGCCGAATAGTCTCTGCCGTGTCGGCAGCGGGGCGAGCACCATCGTCGACTCCGATTGCGGCGTAGAAGCAGAGTCCCGGAAACTCCCATCGTCGAAGTACAAGGGAGTTGTGCCCCAACCCAATGGACGCTGGGGAGCCCAGATTTACGAGAAGCATCAGCGCGTTTGGCTCGGCACTTTCAACGGGGAAGACGAGGCTGCCAGAGCCTACGACATCGCCGCCCAGAGGTTTCGCGGCAAGGACGCTGTCACCAACTTCAAGCCCCTCACCGCCGGCGACGCCTCCGACGACGATATCGAGACGGCGTTCCTGAACTCGCATTCCAAAACCGAGATCGTGGACATGCTGAGGAAGCACACATACAATGACGAACTCGAGCAGAACAAGCGCAACCGCAACCGCGACTTGGCTGGAGGAAATTACAGGAAGTCGCTGAAGGAGGAAGGGGCAGGCGCGTGCTTCGAGCGGGCCCGGAAAGAGCGTGAGCAGCTGTTCGAGAAAACCGTTACGCCGAGCGACGTGGGGAAGCTGAATCGATTGGTGATACCGAAACAGCACGCGGAAAAGCACTTCCCGTTGCAGAGCGGAAGCGCTTCTTGCACCACCGCCACGACGGCTGCGGCGGCGAAGGGCGTGCTTTTGAATTTTGAGGACGTTGGAGGGAAAGTGTGGAGGTTTCGATACTCGTACTGGAATAGTAGCCAGAGCTACGTGCTAACGAAAGGGTGGAGCCGGTTCGTGAAGGAGAAGAACCTGAAAGCCGGTGATACGGTCACTTTCCACAGGTCGACCGGACCGGACTGGCAGCTCTACATTGACTGGAAAGCCAGGAGTAACCAGACCGGCGGCGGCAAAGCGGTCGGAATTGAGGGGTTGTTCAACCCGGTCGGACCGGTTGTGGAGCCGATTCAGATGGTTCGGCTATTCGGGGTCAACATTTTGAAAATACCCGGTTCTGATTCCGTAGGTGGGTGCTGCCATGGCAAGAGAAAAGAGATGGAGCCGTTTTCGTTAGATTTTAGTAAGAAGCCAAAGATAATTGGAGCTTTGTAA 1179 0.5683 MDASSCIDESTTSDSVSIPLSPATTLSPFTVTPQKSPPPPPPPNSLCRVGSGASTIVDSDCGVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNGEDEAARAYDIAAQRFRGKDAVTNFKPLTAGDASDDDIETAFLNSHSKTEIVDMLRKHTYNDELEQNKRNRNRDLAGGNYRKSLKEEGAGACFERARKEREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLQSGSASCTTATTAAAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVTFHRSTGPDWQLYIDWKARSNQTGGGKAVGIEGLFNPVGPVVEPIQMVRLFGVNILKIPGSDSVGGCCHGKRKEMEPFSLDFSKKPKIIGAL 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1627 392 CDD B3_DNA 206 305 IPR003340 GO:0003677
Dere13g1627 392 SUPERFAMILY DNA-binding pseudobarrel domain 205 318 IPR015300 -
Dere13g1627 392 CDD AP2 73 128 IPR001471 GO:0003700|GO:0006355
Dere13g1627 392 SMART rav1_2 74 135 IPR001471 GO:0003700|GO:0006355
Dere13g1627 392 Pfam B3 DNA binding domain 207 307 IPR003340 GO:0003677
Dere13g1627 392 ProSiteProfiles AP2/ERF domain profile. 74 129 IPR001471 GO:0003700|GO:0006355
Dere13g1627 392 Gene3D - 196 328 IPR015300 -
Dere13g1627 392 SMART B3_2 207 320 IPR003340 GO:0003677
Dere13g1627 392 MobiDBLite consensus disorder prediction 1 51 - -
Dere13g1627 392 Gene3D AP2/ERF domain 73 130 IPR036955 GO:0003700|GO:0006355
Dere13g1627 392 MobiDBLite consensus disorder prediction 1 31 - -
Dere13g1627 392 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 69 366 IPR044800 GO:0003700
Dere13g1627 392 MobiDBLite consensus disorder prediction 32 46 - -
Dere13g1627 392 FunFam AP2 domain-containing protein RAP2.8 73 130 - -
Dere13g1627 392 ProSiteProfiles B3 DNA-binding domain profile. 207 320 IPR003340 GO:0003677
Dere13g1627 392 Pfam AP2 domain 73 121 IPR001471 GO:0003700|GO:0006355
Dere13g1627 392 SUPERFAMILY DNA-binding domain 73 129 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1627 Dere-ChrDere13 22085823 22087001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1627 4 391 RAV Transcription Factor Family AT1G13260 57.949 9.24e-141 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Dere13g1627 B3 2e-28 CL0405