Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1620 ATGAGCGAGACAGGCACTCACCAATCTGTGGCATTGCCGATATCGCGAAGAAGCAAAACCCAGAATTACATGGTTTTGAATCTCTGTCCTGACTTGCATCATCATCGCTCTCTTTCTCTCTCTATGGCTGGAACATCGTGGTTGGTGGACAAAAGTAGAATAGCAACCAAAATAAAGAGTGCTTCTGGAGCATGTGATCCTGAGAAGGTTATATGGAAAAGCAATCCTACCAGAGCTTGCCCAAATTGTCAGTATATTATTGACAACAGTGATGTAGCACAAGAGTGGCCTGGATTACCAAAGGGTGTGAAATTTGACCCATCTGATCAAGACATAATATGCCACTTGATTGCTAAAGTTGGTGTAGGAAACTCAAAACCCCATCCTTTTATTGATGAGTTTATCACAACTCTTGAAGTGGATGATGGAATTTGTTATACTCATCCAAAATATTTACCAGGTATTAATCAAGATGGAAGTGCTACTCACTTCTTCCATAGAGCAATCAAGGCTTATAACACTGGCACTCGAAAGCGTCGAAAAATACATGGTCAGGATTTTGGTGATGTCCGCTGGCACAAGACTGGAAAGACTAAACCAGTCATGTTGGATGGAGTTCAAGTGGGCTGTAAAAAGATTATGGTTCTCTATATGAGCACTGTTAAAGGAGGAAAAGCTGAGAAAACTAATTGGGTCATGCATCAGTATCACCTAGGAACACAAGAGGATGAAAAGAATGGTGAGTATGTTGTCTCTAAGGTATTTTACCAGCAGCAGCAGGTCAAATTGGGTGATAAAGATGACCTGGAAATTCCTGAAAGCACTGAAGCCATTGAAGCAACAATTGTGCAAGTTGATCCAGTCACTCCCAAATCAGTGACTCCTGATCCTCCTTGTAAGGAAAGGCAACATTCAGGCATTGACCTGGGACAAGAATCATATCTCATTCCTCAGCATCCTTCAATGGATCATGTAGAAGATGCAATTCAAGCTGATTATGAAGAGCCAAAAACTGATCCATCTGAGGTAGAAACTCAAAATAATGAAGGGATAGATGATAACAAAAACAATGCTGACGAAGAATCAAAATGGTGGGATAGTGAGTCACAGCATCTGTTGAATTCACAGCAACTTGTTGAAGCACTGTCCTTGTGTGATGACCTCCTTCATAGCCAATCCCCCAATAGAGAAGACAAAAGTGGAGAACATAAGGACCAACCCAGTCTTTCTGTTTATGCTCAACTAGGACCAGAGCATCTGAAAAAGGATCTTGAAGAATGCCAAAATCTCACCATTGATCCTGCAAATATAGAACTAGATACACCTCCAGAGTTTCGACTAAGTCAGCTGGACTTTGGTTCACAGGATAGCTACGTCTCCTGGGGTGGCGGCAAGGCAGCAAACTGA 1407 0.4193 MSETGTHQSVALPISRRSKTQNYMVLNLCPDLHHHRSLSLSMAGTSWLVDKSRIATKIKSASGACDPEKVIWKSNPTRACPNCQYIIDNSDVAQEWPGLPKGVKFDPSDQDIICHLIAKVGVGNSKPHPFIDEFITTLEVDDGICYTHPKYLPGINQDGSATHFFHRAIKAYNTGTRKRRKIHGQDFGDVRWHKTGKTKPVMLDGVQVGCKKIMVLYMSTVKGGKAEKTNWVMHQYHLGTQEDEKNGEYVVSKVFYQQQQVKLGDKDDLEIPESTEAIEATIVQVDPVTPKSVTPDPPCKERQHSGIDLGQESYLIPQHPSMDHVEDAIQADYEEPKTDPSEVETQNNEGIDDNKNNADEESKWWDSESQHLLNSQQLVEALSLCDDLLHSQSPNREDKSGEHKDQPSLSVYAQLGPEHLKKDLEECQNLTIDPANIELDTPPEFRLSQLDFGSQDSYVSWGGGKAAN 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1620 468 Pfam No apical meristem (NAM) protein 100 238 IPR003441 GO:0003677|GO:0006355
Dere13g1620 468 Gene3D NAC domain 108 262 IPR036093 GO:0003677|GO:0006355
Dere13g1620 468 ProSiteProfiles NAC domain profile. 99 257 IPR003441 GO:0003677|GO:0006355
Dere13g1620 468 SUPERFAMILY NAC domain 84 257 IPR036093 GO:0003677|GO:0006355
Dere13g1620 468 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 45 428 IPR044799 GO:0003700
Dere13g1620 468 FunFam NAC domain-containing protein 8 108 261 - -
Dere13g1620 468 MobiDBLite consensus disorder prediction 335 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1620 Dere-ChrDere13 22027478 22032727 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1620 46 264 NAC Transcription Factor Family AT4G28500 51.556 1.68e-70 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere13g1620 NAM 6.3e-20 No_clan