Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1618 ATGCTGGTTCGGAGGAGGGTGATGACCTGGAGAAGGGTGGGAAAGTCTCTTCAAGCTCTGGTTGCTCATGGCTCACTTTTCTCATTCACGCTCCTTCTTGTTCTCAAGATTGACCATGTCGTCCCTTACTCATGGTGGATCATATTTTTGCCTCTGTGGCTTTTTCATGCTGTTGTAGCTCGAGGACGGTTTTCCTTGCCTGCTCCTTCAGTGCCTCATGATCGCCATGTACGAACAGAAAACGTAGTCTTTATTTGGGCTCCTTGTCATGCCATCATGGCAACTCCATTACTTGTTGCTTTTGAGCTACTTCTTTGTATCCATATTGAGAGTCCTAATGTGGTAAATTTAAAGATAGCATTATTACCCCTGCTGGCCTTTGAAGTGGCAATTTTGATTGATAACCTCAGGATGTGTAGGACTTTGCTGCCAGGAGATGATGAAAATATGAGTGATGAAACAATGTGGGAAACCCTTCCTCACTTATGGGTTGCAATATCCATGGTCTTCTTAATTGCTGCTACGGTGTTTACTCTTCTTAAGATATGTGGTGATGTTGCTGCTCTAGGCTGGTGGGACTTGCTTATTAACTATGGCATTGGAGAGTTCTTTGCCTTTCTTGTCTGTACAAAGTGGTACAATCCAAGAATTCATGAGAATTGTGAGATTACAGAATCATGGCCACTTTTGGTCAGATACCTGGACTGGGGTAGCAGCTTAGATAGGCAGCGAAGTGGGTTATGCAATCTGCAGGACATTGGTGGGCACATTATGAAGATTCCCTTCATTCTTTTCCAAATACTGCTAGTTATGCGTTTAGAGGGAACACCTTCCAGTGCCAGAAATATACCATTTCAAGTTGTTTTTTCTCCCCTTCTTCTGTTACAAGGAGCTGGGGTTTTATTTGCAGCATATAGATTAGTGGAAAAACTAGTTCTTTTGCTTCACAATGGAGAAATTTCTGCAAGATACTCAGCTGTAGCATCAAAAGCCTGTGATTTCTTTGGGTTCTTGCATCACGGGTCAAGGTTGCTTGGTTGGTGGTCAATAGATGAAACAAGTAGAGAAGAACAAGCTAGAATTTACTGTGGTGGGAGTTCTGGGTTTAATACTTTCTCCCCTGATATGGTGAAGAAAATGCCTAGAGCAGATCTTGCTGAGGAGATTTGGAGACTACAAGCTGCATTGACTGAGCATACAGACGTAACAAAATTCAGCCAGCAAGAGTATGAAAGACTTCAATATGAAAAGATCCTATGCAGAGTTTGCTTTGAAGAGCAGATAAATATGGTTCTGCTTCCTTGCAGACATCACATTCTTTGCAGCACTTGCTGCAAAAAATGTACAAGGTGCCCTGTATGCCGTGTCGCCATCGAAAAACGAATGCCTGTATATGATGTGTAG 1404 0.4266 MLVRRRVMTWRRVGKSLQALVAHGSLFSFTLLLVLKIDHVVPYSWWIIFLPLWLFHAVVARGRFSLPAPSVPHDRHVRTENVVFIWAPCHAIMATPLLVAFELLLCIHIESPNVVNLKIALLPLLAFEVAILIDNLRMCRTLLPGDDENMSDETMWETLPHLWVAISMVFLIAATVFTLLKICGDVAALGWWDLLINYGIGEFFAFLVCTKWYNPRIHENCEITESWPLLVRYLDWGSSLDRQRSGLCNLQDIGGHIMKIPFILFQILLVMRLEGTPSSARNIPFQVVFSPLLLLQGAGVLFAAYRLVEKLVLLLHNGEISARYSAVASKACDFFGFLHHGSRLLGWWSIDETSREEQARIYCGGSSGFNTFSPDMVKKMPRADLAEEIWRLQAALTEHTDVTKFSQQEYERLQYEKILCRVCFEEQINMVLLPCRHHILCSTCCKKCTRCPVCRVAIEKRMPVYDV 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1618 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 396 466 IPR013083 -
Dere13g1618 467 ProSiteProfiles Zinc finger RING-type profile. 420 455 IPR001841 -
Dere13g1618 467 Pfam Zinc finger, C3HC4 type (RING finger) 418 460 - -
Dere13g1618 467 SUPERFAMILY RING/U-box 411 462 - -
Dere13g1618 467 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 8 467 - -
Dere13g1618 467 Pfam Transmembrane Fragile-X-F protein 35 295 IPR019396 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1618 Dere-ChrDere13 21988548 21994361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1618 12 467 C3H Transcription Factor Family AT1G73950 62.284 0.0 576