Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1617 ATGAAAAGGGAAGAAGATCATGGGCAGTGTTCATCACAAGCCATAAACAACTTCCAGAGCTATCAAGAGCAGCTACTTCTACAGCAGATGCAGCAACAGAACAGTATGTTTCCAGAAGTTTCTCCAATCCTACAGCCATGGAATATCCCTCCGGTTCACTCCTTCAACCCGGCGGCTCACTTCGCCAATCCGGTCCGAGTAGACCACGATCCGTTCCTTCTCCCTCCCCCACCTCCTCCAGTACCCTATGCTAGTTTGTTCAACAGGAGGGTTCCTTCTCTGCAGTTTGCATACGACGGTTCATCTTCCGACCATCTCCGGATCCTATCCGAGGCCCTCGGACCCATGGTTCAACCCGGTTCGGCTCCATTCGGCCTCCAAGCTGAGTTGGGCAAGATGACTGCCCAGGAAATTATGGACGCTAAGGCTCTTGCAGCGTCAAAGAGTCATAGTGAAGCTGAAAGGAGACGCAGAGAGAGAATCAATAACCACCTTGCCAAACTTCGCAGCTTATTGCCCAGTACAACCAAGACGGATAAGGCATCATTGCTAGCAGAAGTGATTCAGCACGTGAAGGAGCTGAAGCGCCAAACGTCATTAATAGCAGAAACAAGCCCGGTGCCGACAGAGATCGACGAGCTCACGGTGGACTCCGCCGATGAGGACGGAAGGTTCGTCATCAAGGCCTCGTTTTGCTGTGAAGACAGGTCAGATCTCTTGCCGGAACTCATCAAGACTCTGAAAGCGTTGAGGCTAAGAACCCTCAAAGCTGAGATCACCACGCTCGGTGGACGCGTGAAGAACGTGTTGTTCATTACTGGGGAAGAAGAAGATGATTCGTCAAATAGTGGGGAGCATGATCAAAGCCAGATTATGCAGCAGCAACAGTACTGTATAAGCTCAATACAGGAAGCTCTTAGGGCTGTGATAGAGAAGAGTGGTGGGGATGAGACTGCGAGTGGGAGTGTTAAGAGACAAAGGACTAACCTCAATATCCTCGAACACAGGTCTTTATAA 1017 0.5034 MKREEDHGQCSSQAINNFQSYQEQLLLQQMQQQNSMFPEVSPILQPWNIPPVHSFNPAAHFANPVRVDHDPFLLPPPPPPVPYASLFNRRVPSLQFAYDGSSSDHLRILSEALGPMVQPGSAPFGLQAELGKMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAETSPVPTEIDELTVDSADEDGRFVIKASFCCEDRSDLLPELIKTLKALRLRTLKAEITTLGGRVKNVLFITGEEEDDSSNSGEHDQSQIMQQQQYCISSIQEALRAVIEKSGGDETASGSVKRQRTNLNILEHRSL 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1617 338 PANTHER TRANSCRIPTION FACTOR BHLH30 12 329 IPR045847 GO:0003700|GO:0006355
Dere13g1617 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 149 201 IPR036638 GO:0046983
Dere13g1617 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 145 194 IPR011598 GO:0046983
Dere13g1617 338 FunFam transcription factor bHLH30 140 203 - -
Dere13g1617 338 SMART finulus 151 200 IPR011598 GO:0046983
Dere13g1617 338 Gene3D - 140 201 IPR036638 GO:0046983
Dere13g1617 338 CDD bHLH_AtAIG1_like 140 218 - -
Dere13g1617 338 Pfam Helix-loop-helix DNA-binding domain 148 194 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1617 Dere-ChrDere13 21981511 21983718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1617 11 327 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 56.091 1.59e-109 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere13g1617 HLH 1.6e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere13g1617 13 21981511 21983718 Dere13g1617 13 21981511 21983718 ECH