Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1600 ATGCCCCCTGAGCAAGAAACCAATGTACATGCAACGCCAAACGTTCCGGCCACCGCCAACCGGACGCCGGAGAACAGCTCCGTCCACGCCGAACCTGGAGGTTCCACCACTAACGACGTCAAACCCAGTTTCGAAAATTATGGCATTCCCCTTCAGCACCGCCCAACATTACCCGCGACACTTTCCATTCGTCACCAATCCTTGCGTCCCGTTATTCTCAAATTCGAAGACGTTTCTTACAGTATAACCTTAGGGAGCAAAAAGAATGGTGGCTGTTTTACTTCGGGAGATCCGAAACCGACCCGGACAATACTCAACGGCGTGACTGGGATAGTCCGGCCCGGCGAGTTGATGGCAATGCTGGGGCCATCGGGCAGCGGCAAGACCACGCTACTCACCGCCCTTGCAGGCCGGCTTGCCGGAAAAGTCTCCGGCAACATAACCTACAATGGCCACCCTTTCTCTAGCTCCATGAAGCGCAAGACAGGTTTTGTCTCGCAAGACGATGTGTTATATCCTCACCTCACTGTTCTTGAGACACTGGTCTATACTGCTTTGTTAAGACTACCCAAAAGCCTCACCAAAGAAGAGAAAATGGAGCAAGCCGAGATGATCATCATGGAGCTCGGGTTAACGAGGTGCCGGAACACCGCCGTGGGAGGCGCCTCCGCCTTGTTTCGGGGAATTTCCGGTGGGGAGCGAAAGCGGGTCAGTATCGGGCAGGAGATGTTGGTGAACCCGAGTCTGTTGTTGCTGGATGAACCGACCTCTGGGCTTGACTCCACGGCGGCTCAACGCGTGGTGGCGGTGCTGCGGGGCCTGGCACGGGGTGGCCGGACGGTGGTGACGACTATCCACCAGCCTTCAAGCAGGTTGTACTGGATGTTCGATAAGGTTGTGGTATTATCCGACGGGAACCCGATTTACAGCGGGAAAGCAGATCGGGTTATGGAGTATATTGAATCCATCGGTTTTGTGCCCACTTTCAACTTCATGAACCCAGCTGATTTTCTGCTTGACCTTGCTAATGGCATTGTGGATGATGTTAAACTGGATGATCAGACTGACATGCATGGCAGATTAGACCACATTGAAGATCAATCTTCAATCAAACAGTCTCTAGTTTCATCCTATAAAAGGATCTTATATCCTGCTCTGAAAGAAGAGATTCAACAAAATAATAGAGACCCAGCTGTTTTAGCATCAGGAACTCCCAGAAGCTCAGAGAACCAGTGGAACACCAGTTGGTGGGAGCAATTCAAGGTTCTGCTTAAGAGGGGTTTACAGGAGAGGAGACATGAATCCTATTCAGGCTTAAGAATTTTCCAAGTCTTGTCTGTCTCAATTCTCTCAGGACTTCTTTGGTGGCATTCTGATCACTCACACATACAAGATCAGGTAGGCCTGCTCTTCTTCTTCTCCATCTTCTGGGGATTCTTCCCTCTATTCAATGCCATATTTGCATTCCCTCTGGAGAGGCCAATGCTAATCAAAGAAAGATCCTCAGGAATGTACCACCTCTCATCCTACTATGTAGCCAGAACGGTAGGTGACCTACCCATGGAGCTGGTCCTTCCCACTATCTTTGTAACCATAACCTACTGGATGGGAGGCCTCAAGCCTTCACTCATCGCCTTTGTATTAACCCTCTTAATCATCATCTTCAATGTGCTAGTCTCTCAAGGAATAGGCCTAGCACTCGGGGCCATCTTAATGGAAGTGAAGCAAGCCACAACCTTAGCTTCAGTGACCATGCTGGTGTTTCTGCTAGCTGGTGGCTACTACATTCAGCAGATACCATCTTTCATAGCTTGGCTGAAGTACATATCTTTCAGTCACTACTGCTATAAGCTTCTGGTGGGAGTGCAGTATTCTGAAAATGAGGTTTATGACTGTGGATTGGGGCTGCATTGTCGGGTAATGGATTTTCCTGCCATAAAGTGTCTGGGTGGTCTTGGTCACTTGTGGGGTGATGTGGCTGCACTGGCTGTGATGTTGATTGGATACAGAGTTGTGGCTTATGTGGCTTTGAGGATTGGGCAGTCTCACTGA 2052 0.4976 MPPEQETNVHATPNVPATANRTPENSSVHAEPGGSTTNDVKPSFENYGIPLQHRPTLPATLSIRHQSLRPVILKFEDVSYSITLGSKKNGGCFTSGDPKPTRTILNGVTGIVRPGELMAMLGPSGSGKTTLLTALAGRLAGKVSGNITYNGHPFSSSMKRKTGFVSQDDVLYPHLTVLETLVYTALLRLPKSLTKEEKMEQAEMIIMELGLTRCRNTAVGGASALFRGISGGERKRVSIGQEMLVNPSLLLLDEPTSGLDSTAAQRVVAVLRGLARGGRTVVTTIHQPSSRLYWMFDKVVVLSDGNPIYSGKADRVMEYIESIGFVPTFNFMNPADFLLDLANGIVDDVKLDDQTDMHGRLDHIEDQSSIKQSLVSSYKRILYPALKEEIQQNNRDPAVLASGTPRSSENQWNTSWWEQFKVLLKRGLQERRHESYSGLRIFQVLSVSILSGLLWWHSDHSHIQDQVGLLFFFSIFWGFFPLFNAIFAFPLERPMLIKERSSGMYHLSSYYVARTVGDLPMELVLPTIFVTITYWMGGLKPSLIAFVLTLLIIIFNVLVSQGIGLALGAILMEVKQATTLASVTMLVFLLAGGYYIQQIPSFIAWLKYISFSHYCYKLLVGVQYSENEVYDCGLGLHCRVMDFPAIKCLGGLGHLWGDVAALAVMLIGYRVVAYVALRIGQSH 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1600 683 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 73 329 IPR003439 GO:0005524
Dere13g1600 683 MobiDBLite consensus disorder prediction 1 42 - -
Dere13g1600 683 Pfam ABC transporter 105 257 IPR003439 GO:0005524
Dere13g1600 683 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 100 323 IPR027417 -
Dere13g1600 683 ProSitePatterns ABC transporters family signature. 229 243 IPR017871 GO:0005524|GO:0016887
Dere13g1600 683 CDD ABCG_EPDR 70 311 - -
Dere13g1600 683 SMART AAA_5 114 306 IPR003593 GO:0016887
Dere13g1600 683 Pfam ABC-2 type transporter 418 624 IPR013525 GO:0016020|GO:0140359
Dere13g1600 683 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 40 673 - -
Dere13g1600 683 FunFam ABC transporter G family member 22 92 323 - -
Dere13g1600 683 Pfam ABC-2 type transporter 286 349 IPR043926 GO:0140359
Dere13g1600 683 Gene3D - 76 323 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1600 Dere-ChrDere13 21812924 21816931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1600 99 316 Calmodulin-binding Proteins AT2G36910 30.973 3.04e-13 71.6