Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1588 ATGAGGGATGGAAGAAGAAGGAAGCTGCATTTTAGCAAACTCTATTCATTCACATGTGGTAAAACATCATTCAAGGAAGATCATTCACAGATTGGAGGAAGAGGCTATTCCAGGGTTGTCTTCTGCAATGAACCAGCTGGCCTTGAGGCCGGAATTCAGAATTATGCAGATAATTCTGTCAGTTCTACAAAATATACTATTGCTACTTTCTTGCCCAAGTCACTGTTTGAGCAGTTCAGGAGGGTGGCTAATTTCTACTTTTTAGTTATTGGTGTCTTATCCTTCACCAAACTTGCTCCCTATACAGCTGTTAGTTCTATCTTTCCTCTGATCATTGTTATTGGGGCAACCATGGTGAAAGAAGGTATCGAAGATTGGCGTCGCAAAAAGCAGGATATTGAGGTGAACAATAGAAGAGTTAAAGTGCATAAAGGTGATGGTGTTTTCGAATATACCGAGTGGAAAAATCTGATGGTAGGGAATATAGTGAAGATAGAGAAGGATGAATTCTTTCCAGCAGATCTGCTATTGCTTTCATCGAGCTATGATGATGCTGTCTGTTATGTTGAGACCATGAACTTGGATGGCGAGACTAATTTAAAGTTAAAACAAGGATTGGAGGTAACTTGTTCCTTAAATGAGGATTTAAACTTCCGGGATTTTCATGGCACAGTAAAATGTGAAGACCCAAATGCAAATTTGTACTCTTTTATCGGTAGCTTGGATTTTGAAGAGCAGCAATATCCTCTTTCTATTCAGCAACTTCTTCTGAGAGACTCTAAACTCCGTAATACATCCTACATATTTGGAGCTGTCATCTTTACTGGCCATGACACCAAGGTTATACAAAATTCTACTGCTCCCCCTTCAAAGAGAAGCAAGATTGAGAAGAAGATGGACAAAATCATATACTTCATGTTCTGTGTTCTATTCCTATTGGCATCTGTTGGATCAATTTTCTTTGGCATCGCAACTAAAGATGATTTGGAAAATGGGGCCATGAAAAGATGGTATCTAAGACCAGATAATTCTACAATTTTCTTTGATCCAAAAAGAGCAGCAGCTGCTGCAATATTTCATTGCTTGACAGCTTTAATGTTGTATAGCAACTTTATTCCTATATCCTTGTATGTGTCCATAGAAATTGTGAAAGTCCTTCAGAGCATCTTCATCGATCAAGATATCCATATGTACTACGAAGATGCGGACAAACCTGCTCATGCCCGTACTTCAAACTTGAACGAAGAACTTGGCCAAATTGACACTATACTTTCTGACAAAACTGGAACACTGACCTGCAACTCTATGGAGTTCATCAAATGTTCAGTTGCTGGGGTGGCTTATGGACGTGGTTTCACAGAGGTTGAGAAGGCCATGGATAGAAGAAACGGCTCACCATTGATTCATGAACAAGTTAATGGAATAGAATTAGATAACATCAGGGATTCTACTGATACAAAAGCACCAGTCAAAGGTTTTAATTTTACAGATGAAAGGATAATGAATGGGAACTGGGTTAATGAGCCTCGTGCAGATGTTATACAGAAGTTTTTTCGTTTATTGGCAATCTGTCATACAGCCATACCTGAAGTGGATGAAGACACAGGAAAAGTCTCATATGAGGCTGAATCCCCAGATGAAGCAGCATTCGTTATTGCAGCTAGAGAACTTGGCTTTGAGTTCTATAAAAGGACTCAGACTAGTTTGTCAATGTACGAGTTGGATTCAGTTTCCGGCAAGAAAGTTGAAAGGATATACAAACTTCTCAACGTTTTAGAATTCAATAGCTCAAGGAAACGAATGTCGGTAATAGTGGAAGATGACGAGGGAAAAATTTTGCTACTCAGTAAAGGTGCTGACAGTGTCATGTTCGAAAGGCTTGCCAGGAATGGGAGGGAGTTTGAAGAGGAAACCATGGAGCATGTGCATGAATATGCCGATGCTGGTCTGAGGACCCTCATACTAGCCTATCGTGAACTGGATGAGGTGGAATACAGGGAGTTTGATAAGAAATTTTCTGAGGCCAAAAATTCAGTTAGCGTGGATCAGGAAACAATAATTGGTGAATTATTGGATAAAATTGAGAGGAATCTAATCCTCCTTGGTGCCACTGCAGTAGAGGACAAGCTCCAAAACGGGGTTCCTGATTGCATTGACAAGCTTGCCCAAGCCGGAATTAAAATTTGGGTTCTGACTGGAGATAAAATGGAGACTGCCATCAATATTGGTTTCGCTTGTAGTTTGCTTAGACAAGGAATGAAGCAGATTATAATTCACCTGGAGACTCCAGAAATTCAAGCATTGGAGAAGGAAGAAGACAAAATTGCTATTGGCAAGGCGTCAAGAGAAAGTGTCCACCGTCAGATATCTGAAGGCACTGCTCAGCTTGCTGCATCTAAGGGGACCTCTCAGCAAGCATTTGCTCTAATTATCGATGGAAAATCACTTGCTTATGCTCTAGAGGATAAAATGAAGAACATGTTTCTGGAGCTTGCAATTAGTTGTGCATCTGTTATCTGCTGTCGTTCCTCGCCTAAGCAGAAGGCACTGGTCACGAGACTGGTTAAATCAGGAACTGGAAAAACTACATTAGCTATTGGTGATGGAGCCAATGATGTGGGAATGCTTCAAGAGGCAGATATAGGGATTGGGATTAGTGGTGTTGAAGGAATGCAGGCTGTCATGTCTAGTGACATTGCAATTGCACAGTTCCGATATTTGGAACGGTTACTACTTGTACATGGACATTGGTGTTACCGGAGGATATCATCAATGATATGTTACTTTTTCTACAAGAATATCACATTTTGCTTCACTCTATTCTTGTATGAGGTTTATACTTCATTCTCTGCACAACCTGCATACAATGACTGGTTTTTGTCTCTCTATAACGTCTTCTTTTCATCACTTCCCGTGATTGCCCTCGGGGTATTTGACCAAGATGTCTCTGGCCGGTACTGTCTCAAGTTTCCTTTGTTATATCAAGAAGGAGTACAGAATGTGCTCTTCAGTTGGCGCCGCATATTCAGCTGGATGCTAAATGGATTCATCAGTGCCATAATAATTTTCTTCTTCTGCACAAAGGCAACGGAGCTTCAGGCCTTTGACAGTGAGGGAAGAACCGCCGGGAGAGACATACTTGGAGCAACAATGTACACGTGCGTTGTGTGGGTTGTGAACTTGCAGATGGCACTTGCCATAAGCTACTTCACCTTGATACAACATATCTTCATCTGGGGTTCCATTGCTTTCTGGTATATCTTCCTCCTGATATACGGGGCAATGCCTCCATCATTTTCTGGAAATGCTTACGAAGTCTTCGTTGAAACTCTAGCTCCTTCGCCTTCCTTTTGGCTCGTGACACTCTTCGTCGTCATTTCAAGTCTCACACCATACTTCTCATACTCTGCTATTCAGATGAGGTTCTTCCCAATGTATCATGAAATGGTTCAATGGGTGAGGCATGAAGGGAAGACAAATGATCCTGAGTTTTGTAATATGGTGAGGCAGAGATCATTGAGGCCAACCACTGTGGGTTCAACAGCTCGCGTAGCTGCTAGAAACAGAACTTCTAATCATAGATAG 3585 0.4128 MRDGRRRKLHFSKLYSFTCGKTSFKEDHSQIGGRGYSRVVFCNEPAGLEAGIQNYADNSVSSTKYTIATFLPKSLFEQFRRVANFYFLVIGVLSFTKLAPYTAVSSIFPLIIVIGATMVKEGIEDWRRKKQDIEVNNRRVKVHKGDGVFEYTEWKNLMVGNIVKIEKDEFFPADLLLLSSSYDDAVCYVETMNLDGETNLKLKQGLEVTCSLNEDLNFRDFHGTVKCEDPNANLYSFIGSLDFEEQQYPLSIQQLLLRDSKLRNTSYIFGAVIFTGHDTKVIQNSTAPPSKRSKIEKKMDKIIYFMFCVLFLLASVGSIFFGIATKDDLENGAMKRWYLRPDNSTIFFDPKRAAAAAIFHCLTALMLYSNFIPISLYVSIEIVKVLQSIFIDQDIHMYYEDADKPAHARTSNLNEELGQIDTILSDKTGTLTCNSMEFIKCSVAGVAYGRGFTEVEKAMDRRNGSPLIHEQVNGIELDNIRDSTDTKAPVKGFNFTDERIMNGNWVNEPRADVIQKFFRLLAICHTAIPEVDEDTGKVSYEAESPDEAAFVIAARELGFEFYKRTQTSLSMYELDSVSGKKVERIYKLLNVLEFNSSRKRMSVIVEDDEGKILLLSKGADSVMFERLARNGREFEEETMEHVHEYADAGLRTLILAYRELDEVEYREFDKKFSEAKNSVSVDQETIIGELLDKIERNLILLGATAVEDKLQNGVPDCIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQGMKQIIIHLETPEIQALEKEEDKIAIGKASRESVHRQISEGTAQLAASKGTSQQAFALIIDGKSLAYALEDKMKNMFLELAISCASVICCRSSPKQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRISSMICYFFYKNITFCFTLFLYEVYTSFSAQPAYNDWFLSLYNVFFSSLPVIALGVFDQDVSGRYCLKFPLLYQEGVQNVLFSWRRIFSWMLNGFISAIIIFFFCTKATELQAFDSEGRTAGRDILGATMYTCVVWVVNLQMALAISYFTLIQHIFIWGSIAFWYIFLLIYGAMPPSFSGNAYEVFVETLAPSPSFWLVTLFVVISSLTPYFSYSAIQMRFFPMYHEMVQWVRHEGKTNDPEFCNMVRQRSLRPTTVGSTARVAARNRTSNHR 1194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1588 1194 ProSitePatterns E1-E2 ATPases phosphorylation site. 426 432 IPR018303 -
Dere13g1588 1194 FunFam Phospholipid-transporting ATPase 543 701 - -
Dere13g1588 1194 Pfam Phospholipid-translocating P-type ATPase C-terminal 894 1144 IPR032630 -
Dere13g1588 1194 Gene3D - 697 906 IPR023214 -
Dere13g1588 1194 FunFam Phospholipid-transporting ATPase 701 906 - -
Dere13g1588 1194 PRINTS P-type cation-transporting ATPase superfamily signature 424 438 - -
Dere13g1588 1194 PRINTS P-type cation-transporting ATPase superfamily signature 866 885 - -
Dere13g1588 1194 Pfam Cation transport ATPase (P-type) 534 626 - -
Dere13g1588 1194 SUPERFAMILY HAD-like 419 921 IPR036412 -
Dere13g1588 1194 SUPERFAMILY Calcium ATPase, transduction domain A 140 283 IPR008250 -
Dere13g1588 1194 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 492 664 IPR023299 GO:0000166
Dere13g1588 1194 SFLD p-type atpase 406 917 IPR044492 -
Dere13g1588 1194 SUPERFAMILY Calcium ATPase, transmembrane domain M 52 1144 IPR023298 -
Dere13g1588 1194 Gene3D - 116 286 - -
Dere13g1588 1194 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 37 1155 - -
Dere13g1588 1194 NCBIfam phospholipid-translocating P-type ATPase 55 1151 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Dere13g1588 1194 CDD P-type_ATPase_APLT_Dnf-like 57 1015 - -
Dere13g1588 1194 SFLD Haloacid Dehalogenase 406 917 - -
Dere13g1588 1194 NCBIfam HAD-IC family P-type ATPase 833 950 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere13g1588 1194 Gene3D - 545 680 IPR023299 GO:0000166
Dere13g1588 1194 FunFam Phospholipid-transporting ATPase 116 286 - -
Dere13g1588 1194 Pfam Phospholipid-translocating ATPase N-terminal 41 106 IPR032631 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1588 Dere-ChrDere13 21649852 21656102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1588 9 1190 Primary Pumps ATPases AT1G68710 74.607 0.0 1902