Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1578 ATGAGAGTCAAAAAGAAACCCAATGTCCTCCTTGGACCGGCAACGAAAGTGCGAAGCCCTCAATGTATCAGTAAGGCGCTTGATGTGAGGGAGGGAGTGACAGAGAGCTCAACGGAAAGGAAAGGGGATGATGGTGATGCTGTGGATCCTTGTAGCTGGGCTATGGTCACTTGCTCTCCTGATCTTTTTGTCATTGCCTTGCGACTAAGTAATAACAGTCTCACTGGACAAATTCCTTCCTCGTTGGCTAATATGACCCAGCTTGTCTTTCTTATTGTAGGCAATCCTCGGATATGTACCACTGGAACTGAGCAAAACTGCTACAGAACAGCCCTGCTTTTTAACTCCTTGAATAATTCTCAAGTTCCTACCACAGTTTCTTGCATTGCTTCTCAGGATTCACAATCCTTTGGTAGACCTAAAAATCACAAGTTGCAACAACACCGTGAAGAAATTTGCCTTGGAAACCTCAAGAAGTTCCATTTCAAAGAACTTCAGGTTGCTACAAATAACTTCAACAGCAAGAACTTGATTGGCAAAGGTGGATTTGGAAATGTGTGTAAAGGGTACCTCCCAAATGGAACCTCCTTCGCCTCTGGATTTTGTATGATAGCTACTGAGAGGCTCTTGGTTTATCCCTACATTTTCAATGGTAGTGTTGCTTCACGTCTTAAAGGCAAGCTTGTTCTTGATTGGGGAACAAGGAAGAGGATAGCCCTAGGAGTTACAAGGGGCTTCCTATATTTGGATGAGCAGTGTGACCCCAAGATTATTCACAAGGATGTGAAGGCTCCAAATATCTTGCTTGATGATGACTATGAGACTGTGGTAGGGGATTTTGGGTTGGCAAAGCTGTTGGATCACCATGATTCTCATGTGACAACAGCTGTGAGAGGCACTGTTAGGCATATAGCTCCAGAGTATCTCTCAATAGGCCAGTCCTCTAAAAAGATAGATGTGTTTGGCTTTGGAATCCTTCTTCTTGAATTAATCTCAGGCCAGAGAGCACATGAATTTGGAAAAGCAGCAAACCAGAAAGGAGCTATTCTTGACTGGTACCTTCCTAGTCATAGACCAAAGATGTCTGAAGTGGTTCGGATGCTTGAAGGAGATGGGCTTGCAGAGAAATGGGAAGCCTCACAAAGAGCTAATTCAACAAGAAGCAGAGGGAATGAACTCTCTTCATCAGAGAGATACTCCGATCTTACTGATGACTCTTCATTGCTAACATAG 1233 0.438 MRVKKKPNVLLGPATKVRSPQCISKALDVREGVTESSTERKGDDGDAVDPCSWAMVTCSPDLFVIALRLSNNSLTGQIPSSLANMTQLVFLIVGNPRICTTGTEQNCYRTALLFNSLNNSQVPTTVSCIASQDSQSFGRPKNHKLQQHREEICLGNLKKFHFKELQVATNNFNSKNLIGKGGFGNVCKGYLPNGTSFASGFCMIATERLLVYPYIFNGSVASRLKGKLVLDWGTRKRIALGVTRGFLYLDEQCDPKIIHKDVKAPNILLDDDYETVVGDFGLAKLLDHHDSHVTTAVRGTVRHIAPEYLSIGQSSKKIDVFGFGILLLELISGQRAHEFGKAANQKGAILDWYLPSHRPKMSEVVRMLEGDGLAEKWEASQRANSTRSRGNELSSSERYSDLTDDSSLLT 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1578 410 ProSiteProfiles Protein kinase domain profile. 131 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1578 410 MobiDBLite consensus disorder prediction 377 410 - -
Dere13g1578 410 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 67 379 - -
Dere13g1578 410 SUPERFAMILY L domain-like 49 101 - -
Dere13g1578 410 Gene3D Transferase(Phosphotransferase) domain 1 216 388 - -
Dere13g1578 410 SUPERFAMILY Protein kinase-like (PK-like) 157 377 IPR011009 -
Dere13g1578 410 MobiDBLite consensus disorder prediction 379 410 - -
Dere13g1578 410 SMART serkin_6 172 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1578 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Dere13g1578 410 Gene3D Phosphorylase Kinase; domain 1 142 199 - -
Dere13g1578 410 Pfam Protein kinase domain 204 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1578 Dere-ChrDere13 21510480 21514789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1578 23 98 Receptor kinase-like Gene Family AT5G16000 35.526 4.06e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Dere13g1578 Pkinase 1.6e-22 CL0016