Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1576 ATGGCACAAGATATTTCCTGTGCTGATTCACATCATAGGCACCCTGGTCTATTGAAAGATCAAGTTTGCCTGGTTAAAAGGAAAGGCTCTGATCGCTATGAGATTGCCCCAATCCAAGATAAACTTTCATTTGAGAAGGGTTTCTTTATAGTAATCCGTGCATGCCAATTGTTGTCCCAAAATAATGATGGAATAATATTGGTAGGGTTGGCAGGTCCTTCAGGGGCTGGGAAAACTGTATTCAGTGACAAAATACTCAACTTCATGCCCAGCATTGCAGTTATTTCAATGGATAATTACAATGATTCCAGTCGAATTGTTGATGGAAATTTTGATGATCCACGCTTAACAGACTATGACACATTGCTCCAGAATGTACATGATTTAAAGGCAGGAAAGCCAGCCGAGGTTCCAATCTATGATTTCAAGTCCAGCTCACGTACAGGTTACAGGACAGTTGATGTCCCGAGCTCCCGAATTGTGATAATAGAGGGTATTTACGCTTTGAGTGAGAGGTTGCGACCTCTACTAGACCTTCGTATATCTGTCACAGGTGGAGTTCATTTTGACCTTGTCAAACGAGTTATGCGTGACATTCAACGTGCTGGTCAACAACCTCAAGAAATCATCCATCAAATATCTGAGACAGTATATCCAATGTACAAGGCCTTTATTGAGCCAGATCTCCAGACAGCACATATCAAAATAATCAACAAGTTCAATCCATTTACTGGGTTCCAGAGTCCTACATACATATTGAAATCAGCGAGGAGTGTGACAGTTGATCAAATTAAAGCTGTTTTCTCTGAAGATTTTAAGGAAACAACTGAGCAGATTTATGACATATATCTTCTACCACCGGGTGAAGATCCAGAATCTTGCCAATCTTATTTACGGATGCGGAATAAGGAGGGGAAATACTGTCTAATGTTTGAGGAATGGGTGACAGATAGTCCATTTATCATATCACCAAGAATCACTTTTGAGGTTAGTGTGCGGCTCCTTGGTGGACTAATGGCCCTGGGATACACAATAGCTACCATCCTTAAAAGGAACAGCCATATATTCTCCGATGATAGGGTTTCTGTGAAACTTGATTGGCTTGAGCAACTTAATCGACATTATGTTCAGGTGCAAGGAAGGGATCGCTTGATTGTAAAGTTCATAGCCCAGCAGCTTGGTATGGAAGGTTCCTACATTGCTCGTACATACATAGAGCAAATTCAACTTGAGAAGATTGTAGATGAGGTTATGGCCCTTCCAGATGATTTAAAATCAAAGCTCCGTCTGCCAGAGGATATGGTGTCAAGCCCCAAAGAAGCACTTTCTAAAGCCTTTGCAGACAGGGTTCCCATGAGAAACACACATATGAGGAGTGGCATGTCACAGTCGTATACAAGTAGAAGAGACAATAATCTACTCAAATCAACTGAATATGGTGCCAGCAATCGAGGGTCGGGTGAAAGAAATCCAGACTCCTCCATAGCACTAACAAACCAGCTTTCAGAACAAATTTCTTCCCTCAATGATAGAATGGATGAGTTTACAAATCGTATTGAAGAGCTGAATTCCAAGTTAAGCATCAATAAAAATTCTCCAAGCCAACAGACTATGACACTCCAAGCTGAAGCCTGCAATGGTTCTGCTCCCACCTCTTACTTCATCACTAGTTTGGGAAGTGGTTCTCTAACAGGATCTATAATGTCAAAGTCCTTGTCTTCATCACAATTAGCTAAGGAGTCACCTTTAATGGATGAGATAACAGGTATTGCGCGGGGCCAGGGCCAGATCATGCATCAAATAGACAACCTCACTAGTCTTCTCCGGGGGAAGTTGGAGGAAAGGTCTCACCAAGCAAGAACCAACGGGAAAAACATAGCTGCTGCTTCAGAATCCACTTCAGTACGTACCATGGTTGCTGTGACTTTTGGTTGTCTAGGGTTCCTTTTGGTGAAGGGATTGGTGACTAGAACTTGA 1977 0.4208 MAQDISCADSHHRHPGLLKDQVCLVKRKGSDRYEIAPIQDKLSFEKGFFIVIRACQLLSQNNDGIILVGLAGPSGAGKTVFSDKILNFMPSIAVISMDNYNDSSRIVDGNFDDPRLTDYDTLLQNVHDLKAGKPAEVPIYDFKSSSRTGYRTVDVPSSRIVIIEGIYALSERLRPLLDLRISVTGGVHFDLVKRVMRDIQRAGQQPQEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQSPTYILKSARSVTVDQIKAVFSEDFKETTEQIYDIYLLPPGEDPESCQSYLRMRNKEGKYCLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIATILKRNSHIFSDDRVSVKLDWLEQLNRHYVQVQGRDRLIVKFIAQQLGMEGSYIARTYIEQIQLEKIVDEVMALPDDLKSKLRLPEDMVSSPKEALSKAFADRVPMRNTHMRSGMSQSYTSRRDNNLLKSTEYGASNRGSGERNPDSSIALTNQLSEQISSLNDRMDEFTNRIEELNSKLSINKNSPSQQTMTLQAEACNGSAPTSYFITSLGSGSLTGSIMSKSLSSSQLAKESPLMDEITGIARGQGQIMHQIDNLTSLLRGKLEERSHQARTNGKNIAAASESTSVRTMVAVTFGCLGFLLVKGLVTRT 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1576 658 Coils Coil 498 532 - -
Dere13g1576 658 Gene3D - 254 413 - -
Dere13g1576 658 Pfam Phosphoribulokinase / Uridine kinase family 68 236 IPR006083 GO:0005524|GO:0016301
Dere13g1576 658 Pfam CYTH domain 270 404 IPR023577 -
Dere13g1576 658 CDD UMPK_like 67 239 - -
Dere13g1576 658 PRINTS Uridine kinase signature 132 147 - -
Dere13g1576 658 PRINTS Uridine kinase signature 224 237 - -
Dere13g1576 658 PRINTS Uridine kinase signature 65 82 - -
Dere13g1576 658 PRINTS Uridine kinase signature 188 198 - -
Dere13g1576 658 SUPERFAMILY CYTH-like phosphatases 272 407 IPR033469 -
Dere13g1576 658 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 53 236 IPR027417 -
Dere13g1576 658 ProSiteProfiles CYTH domain profile. 248 410 IPR023577 -
Dere13g1576 658 Gene3D - 66 247 IPR027417 -
Dere13g1576 658 PANTHER URIDINE KINASE 32 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1576 Dere-ChrDere13 21494658 21503482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1576 66 236 PRT Gene Family AT5G40870 28.333 1.65e-18 87.0