Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1522 ATGAAATTTGGTACTTCAAGTTCAGTGGTAGCTTTGGAAATGGGACTCTCCCAGAGGCCGTTCTGGTCTACTTATTCAGGAGAGTTAAATATGTGTGACAAAGAAAAATTTGAGCTAGATAGAAACGAGGATCCTGTGAGTGATTCTATTAGTATACCCTCGGATTGGAGATTTGCGGTTGCTAATCTTGCAAATACATCAGTTGGTTTGGTGGACTCATATGTTGCAAATTTCTGGGATCATCCCATCAATTCCCAGAACTTGGGATTATGTGACATCAATATGCAGAACAATGGTAGCTGCTCAAACACAATTGAAAACAGAAAAGATGGCCTCGCCTTTTCAAGAGCTGATCATGATAGAATACTTCAAATGGGTTGGAACCCTGCAACTTCAATTGTGAAAGGGGATGCTTTCTTACCAAATGGACCAGCAATGTTTCCACAGAGTTTGTCTCAGATTCCTACTGACTCTGCATTTATTGAACGAGCTGCAAGATTCTCATGCTTCAGTCAGGTCAGTGGAGGTAATTTTGGTGGCATGGTGAACTCATTTGGGATTCCTCAATCCATGGGGCTGTACACTAGACGAGATGCTCTTGCAGGCCATGCGTTAAAGTCAGCACATGGAGCACAATCTCAAGAAAGTGCTCCGAATGCAGGTGAAGCTGTAAAAGATGTGTCCCCATCTGTGCAGAATTTGGCTAATAAAGGAAGCCCACTCAAGAATGACAAAAAGAATGAAAGCCTTGTAACATCTCAAGATGAAGCGAAGCAAACTCTTGGCAGGTCTGCTAATGAGTCTGATAGAGCAGAATCAAGTGGTGATGATGATGCTGGTGGTCAAGATGATGTGCCAATGTTGGAGGCTGCCAGCGGGGAGCCTTCAAACAAAGGACTAAACGCAAGGAAAAGGAAAAGAAGTGGGCAGGATTCTGATAATGAAAAAGCCAATGGATCTCCTGAACTGCCAAGCGAAGCTGCAAAGGACAATTCTGAGAGTCGACAGAAGGGAGACCAACAACCAACTTCAACAACCAGGACATATGGGAAGAATGCCAAACAGGGGTCTCAAGCTTCTGATCCACCAAAAGAGGAATACATACATGTCAGGGCTCGCAGGGGTCAAGCAACAAACAGCCATAGCCTTGCAGAGAGAGTAAGGAGGGAAAGGATCAGTGAAAGGATGAAATTTCTTCAAGACCTTGTGCCTGGATGCAGCAAGGTCACTGGCAAGGCGGTTATGCTAGATGAAATCATTAACTATGTACAGTCACTTCAACGGCAGGTTGAGTTTTTATCTATGAAACTTGCAACAGTCAATTCACGGCTGGATTTTAATCTTGAAGGACTTATTGCTAAAGATCTTCTTCGGCAACGGCCTGGCCCTTCATCAGCATTGGGATTTTCTCCAGAAATGCCTATGGTTTTTTCTCCATTACATTCAACTCAGCCAGGACTTCTGCAGTCAGCTCCTCCCGGCATAGCAAACTCATCCGATATACTTCAGAGAACAATTCATCCACAGTTGGCTCCCTTGGCCGGAGGATTCAAGGATCCTAATCAGCTACCTGAAATATGGGAGGATGAGCTGCATAATGTTGTACAGATGAGCTTTGCAACAACTGCTCCACTGAGTAGCCAAGACGAGGATGGGAATGGGCATACGCCAGCAGGTCAGATGAAAGTTGAACTATGA 1698 0.4452 MKFGTSSSVVALEMGLSQRPFWSTYSGELNMCDKEKFELDRNEDPVSDSISIPSDWRFAVANLANTSVGLVDSYVANFWDHPINSQNLGLCDINMQNNGSCSNTIENRKDGLAFSRADHDRILQMGWNPATSIVKGDAFLPNGPAMFPQSLSQIPTDSAFIERAARFSCFSQVSGGNFGGMVNSFGIPQSMGLYTRRDALAGHALKSAHGAQSQESAPNAGEAVKDVSPSVQNLANKGSPLKNDKKNESLVTSQDEAKQTLGRSANESDRAESSGDDDAGGQDDVPMLEAASGEPSNKGLNARKRKRSGQDSDNEKANGSPELPSEAAKDNSESRQKGDQQPTSTTRTYGKNAKQGSQASDPPKEEYIHVRARRGQATNSHSLAERVRRERISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNSRLDFNLEGLIAKDLLRQRPGPSSALGFSPEMPMVFSPLHSTQPGLLQSAPPGIANSSDILQRTIHPQLAPLAGGFKDPNQLPEIWEDELHNVVQMSFATTAPLSSQDEDGNGHTPAGQMKVEL 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1522 565 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 374 445 IPR036638 GO:0046983
Dere13g1522 565 MobiDBLite consensus disorder prediction 299 313 - -
Dere13g1522 565 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 253 476 IPR024097 GO:0006355
Dere13g1522 565 Gene3D - 373 448 IPR036638 GO:0046983
Dere13g1522 565 Coils Coil 423 443 - -
Dere13g1522 565 MobiDBLite consensus disorder prediction 337 359 - -
Dere13g1522 565 MobiDBLite consensus disorder prediction 205 364 - -
Dere13g1522 565 SMART finulus 382 432 IPR011598 GO:0046983
Dere13g1522 565 MobiDBLite consensus disorder prediction 262 277 - -
Dere13g1522 565 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 376 426 IPR011598 GO:0046983
Dere13g1522 565 MobiDBLite consensus disorder prediction 543 565 - -
Dere13g1522 565 FunFam Basic helix-loop-helix transcription factor 373 445 - -
Dere13g1522 565 Pfam Helix-loop-helix DNA-binding domain 379 427 IPR011598 GO:0046983
Dere13g1522 565 CDD bHLH_AtBPE_like 366 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1522 Dere-ChrDere13 20418817 20422140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1522 29 540 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 42.776 7.02e-109 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere13g1522 HLH 6.3e-06 No_clan