Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1493 ATGGATTCTTGGAGTTACGCCTCAGAAGAGAAAGGCTACATGTTTTCTGACGAAATGGATTTTCCACTTGATATTTTAATGAGAAGTAGAAGAGCAATGGTTGAATGGGACAGTAAAGCCTCTTGTAACTTCGAGAAAGATGGATTTATTTCAGATAAAGAGGTAGTTAAAAGCACGGAGTTTGTGGACTTGGGGTTTTCTGATTTGTTCAGAAGGCCTGTTCATGATAGCCAGCCACTGGAAGCATCAAACTATGAGCAAGATAGTAATTCTAGTAAGAAAGTGAATTCGTCTTCTCAAGTTATTGCTCTAAATTCACCTTTGGGGGAAGAAGAATCTGAGTCAAAGCATTCATGTTCTCAAGTTGAATCTAAATGTCATGATTCATCACTGATTGATTTGAAGTTAGGGCGACTAGGAGATTGTAAAGATGCAAGTAGTGATAAAAATGACAAAGAAGGGTTCACTTTTTCGTCTACATATCCGGCCACGCCTGCAAAGAGAGCTCGCACTTCGAGCTCACCTACTCAAACACCTGTATGTCAAGTTTATGGTTGTAACATGGATCTTAGCTCCTCGAAAGATTACCACAAAAGGCACAAAGTTTGTGATGTTCATTCCAAGACAGCCAAAGTTATCGTAAATGGCATTGAACAGAGATTTTGTCAGCAATGCAGCAGGTTCCATTTGCTAGCTGAGTTTGATGATGGTAAGCGCAGTTGTCGAAGACGCCTTGCAGGACATAATGAACGTCGAAGGAAGCCTCAGTTTGATGACATCTCCAGTAAACCGCATAAGATACTCCAGTCATGTCAAGGTACCAAACATCTTGGAGCTTCGCTACAGAATAGATCCCAGTTTGCCTTTCAAGACATGTTTCGAAGTGGCATATTTTACTCAGGAAAGTATGAACAAACCAATCAGATTGGACATATCAAATTTGAAGATGAATCAATTTACAATCATCAGCTAGCAGTACCTGTAACACATGGTCAAGAGTTATCCAGGGCCTCCAACTCCAGCAGTTGTGCTCTCTCTCTTCTGTCAGCTCAGTCACAGGGTCTGCCACGCTACTCAGCCGGTTCTTTTTTTTCTCAGGGCATCTGCACACAGTGCAGTGATGTCCAAGTTTCTGAAACACCTTTTGGAGTAAGCTATCTGGATAAATATGTCCCAAATGAGTCCCTAAACCCTATGGAAGTTACTAAGAATGGATCCATAATGCTTTCTGACACTGGTCATGCTCTTCAACTTAAAGTCCACGGAGATGATATTTGCCAACCATCAGACTTGGTGAATGCCAAATATCATCTTCCCCCTGAACATGGAGCCACTGTTGATCTGTTCCAATTGTCATCACATCTTCAAAGGGTGGAGCAGCAAAGAAATTCTTTTCCAGTGAAGTGTGAAAATGAGGACGGCTGCTTTTTTCCAACCGTGTGA 1443 0.4165 MDSWSYASEEKGYMFSDEMDFPLDILMRSRRAMVEWDSKASCNFEKDGFISDKEVVKSTEFVDLGFSDLFRRPVHDSQPLEASNYEQDSNSSKKVNSSSQVIALNSPLGEEESESKHSCSQVESKCHDSSLIDLKLGRLGDCKDASSDKNDKEGFTFSSTYPATPAKRARTSSSPTQTPVCQVYGCNMDLSSSKDYHKRHKVCDVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNERRRKPQFDDISSKPHKILQSCQGTKHLGASLQNRSQFAFQDMFRSGIFYSGKYEQTNQIGHIKFEDESIYNHQLAVPVTHGQELSRASNSSSCALSLLSAQSQGLPRYSAGSFFSQGICTQCSDVQVSETPFGVSYLDKYVPNESLNPMEVTKNGSIMLSDTGHALQLKVHGDDICQPSDLVNAKYHLPPEHGATVDLFQLSSHLQRVEQQRNSFPVKCENEDGCFFPTV 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1493 480 MobiDBLite consensus disorder prediction 152 177 - -
Dere13g1493 480 FunFam Squamosa promoter-binding-like protein 14 172 242 - -
Dere13g1493 480 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 110 387 IPR044817 GO:0003677
Dere13g1493 480 Pfam SBP domain 181 254 IPR004333 GO:0003677
Dere13g1493 480 MobiDBLite consensus disorder prediction 78 100 - -
Dere13g1493 480 SUPERFAMILY SBT domain 179 260 IPR036893 GO:0003677|GO:0005634
Dere13g1493 480 Gene3D - 171 242 IPR036893 GO:0003677|GO:0005634
Dere13g1493 480 ProSiteProfiles Zinc finger SBP-type profile. 178 255 IPR004333 GO:0003677
Dere13g1493 480 MobiDBLite consensus disorder prediction 80 100 - -
Dere13g1493 480 MobiDBLite consensus disorder prediction 145 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1493 Dere-ChrDere13 20031094 20035284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1493 1 478 SBP-box Gene Family AT1G69170 33.735 1.76e-59 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Dere13g1493 SBP 1.1e-31 No_clan