Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1490 ATGCCCAGCTCGAGGCAATCCTTCTACATCTCTTTCTCTTCTTCGTCTTCTTTTTGGTTTTCTATCATTCTCTTCCACTCCATTTTTCTTTATGGCCTAGCATTCTCTGCAAATCATGAAGCATCTGTTTTGTTCTCTTGGCTTCGTAGCTCTGCTTCACCACCACCTCCATCTTTCTCCAACTGGAACATGCTTGACACTAGCCCATGCAATTGGACCTCCATAGCATGCTCCTCACAAGGTTTTATCACTGAAATCAATATACAATCCATCCCTCTAGAGCTTTCCTTGCCTTCCAATCTCTCTTTCTTTCTCCATCTTCAAAAACTAGTCATTTCTGATGCCAATCTCACTGGAACCATCCCTATTAACATTGGTGACTGCTCTGCCCTTACTGTCATTGACCTTAACTCCAATAATCTTGTAGGGTCTATCCCGGCCAGTATAGGTAAGCTCCAAAACTTGCAGAGCTTGTCACTGAACTCCAACCAGCTCACAGGAAAAATCCCAGTTGAGCTAAGCAACTGCATTAGCCTTAAAAGTATCATCATTTTTGATAACCAGCTAAGTGGGACTATCTCACCAGAGCTAGGAAAGTTGTCAAAACTTGAGATTCTTAGAGCAGGAGGAAACAAAGATATAGTTGGGAAAATCCCTGAAGAGCTTGGAGAATGCAGCAATTTGACTGTGTTGGGGCTGGCTGATACTCGTATATCAGGCTCTTTGCCAGCTTCATTGGGAAGACTAAGCAAGCTTCAGAACTTGTCCATCTATACTACAATGCTATCTGGTGAGATTCCAGCAGAGTTAGGTAACTGCTCTGAACTTGTTGATTTATTCCTCTATGAAAATAGTCTATCAGGGTCTATTCCATCTGAACTGGGTAAGCTCCAAAAGCTCGAACAATTATTTTTATGGCAAAATAGTCTTGTGGGGGCTATCCCAGAAGAGATTGGAAACTGTACAAGCTTGAGAAAAATTGATCTCTCTTTGAATTCTCTATCTGGAACTATACCTTTGTCTTTGGGGAATCTTTTAAAACTTGAGGAGTTTATGATAAGTGATAATAATGTGTCTGGTTCAATACCTTCAAGTCTTTCAAAGGCTTCATATTTGCAACAACTGCAAGTTGACACAAATCAACTCTCAGGTTTGATCCCACCAGAGCTTGGGAAGTTGTCAAAGCTTACAGTTTTCTTTGCTTGGCAAAACCAACTAGAAGGAAGCATTCCTTCTAGTTTGGCCAACTGTAGTAACCTACAATCACTAGATTTGTCTCATAACGCACTTACTGGTAGCATTCCTAGTGGCCTTTTTAAGCTTCAAAACCTTACAAAATTGCTCTTGATTTCCAATGATATTTCGAGTTCAATACCATCAGAAATAGGCAGTTGTAGCTCTCTTATAAGGCTGAGGCTTGGAAACAATAGGATTACTGGTGGGATCCCTGAGACAATTGGAAGCCTTAAAAGCTTGAACTTTTTAGACCTCTCTGAGAATCGCCTTTCTGGGCAAGTCCCAGAAGAGATTGGCAACTGCACAGAATTGCAAATGATAGACCTCAGCAGCAACAACTTAGAGGGTGCGCTGCCTAATTCTTTGTCATCACTAGCTTCACTCCAAGTATTTGATGCATCTTCCAACAGATTTTCAGGTCTCATACCAACAAGTTTTGGTCGTCTTGTTACATTAAATAAGTTAATCCTAGGTGGAAACTTGTTTTCTGGACCAATTCCTGCATCATTGAGCCTATGTTCAAGCCTCCAAATGCTTGATCTCAGTGACAATGAGCTTACTGGAAGCATTCCAGCAGAGCTGGGTCGTATAGAAACTCTTGAAATTGCTCTTAACCTTAGTTGCAATTCTCTCAGTGGGCCAATCCCAGATCAGATATCTGCTCTTACCAAGCTTTCTATACTAGACCTTTCTCATAACCAGTTAGAGGGAGGATTGAACTCACTTGCAGGGCTGGATAATCTTGTCTCTCTTAATATTTCCTACAACAAATTCACGGGTTATCTCCCTGATAATAAGCTTTTTAGGCAATTGTCGCCAAAGGACTTAACTGGGAACCAAGGGCTTTGCTCCTCTGGTCAAGACTCATGCTTTGTGAGTGATTCTAGCAAGACAGATCTGACACTGAATGGAAGTGATGTAAGGAAGTCACGAAGGCTTAAGCTAGCTATTGCTTTGCTGGTAGTCTTAACAATACTTATGACAATTATGGGGATCATTGCAGTGATAAAGGCACGAAGAACCATCAGAGATGATGATTCAGAACTAGGGGACTCATGGTCGTGGCAATATATTCCATTCCAGAAGCTAAACTTTTCAGTGGAGCAAGTGTTGAGATGTTTAGTTGATGGAAATATAATTGGAAAAGGATGTTCTGGTGTTGTTTATCGCGCTGAAATGGATAATGAAGTCATTGCTGTGAAGAAATTGTGGCCAACTACAATGGATGCTGGAGAGGGATTAAAGGATGATAAAAGTGGAATTCGTGACTCATTCTCTACTGAGGTGAAAACACTTGGGTCAATCCGTCATAAAAACATTGTTAGATTCTTGGGTTGTTGTTGGAATAGAAACACAAGACTGCTGATATATGATTATATGCCAAATGGGAGTCTGAGTAGTCTACTTCATGAGAGGAGAGGAAATTTTTTGGAATGGGAACTTAGGTACAGAATCTTGTTAGGGGCTGCAGAAGGTCTTGCATATTTGCACCATGACTGTGTGCCTCCTATAGTACACAGGGACATCAAACCCAACAACATCCTCATTGGCCTTGAGTTTGAGCCTTATATTGCAGACTTTGGCTTGGCTAAGCTAGTTGATGATGGTGGTTTCAATCGGTCCTCCAATACAGTTGCTGGTTCATATGGGTACATTGCTCCAGAATATGGCTACATGATGAAGATCACAGAGAAGAGCGACGTTTATAGCTATGGTGTAGTATTGTTGGAAGTCTTGACGGGCAAGCAACCAATAGATCCAACAATACCAGAAGGCCAACATGTTGTTGATTGGGTGAGACAGAAAAGAGGGGTTGAAGTGCTTGATCCAAGCTTACTGTCAAGACCAGAATCAGAAATAGAGGAAATGATGCAGGCATCAGGCATCGCCTTGTTATGTGTAAACTCATCCCCTGATGAGAGGCCAACAATGAAAGATGTAACAGCAATGCTCAAGGAGATCAGACATGAAAGAGAGGAATATGCAAAAGTTGATGTGCTTCTAAAGAAATCTCCTGCAAGTGATGTTCTGGCAACATCTTCATCATTGCCAGCAATGCAAAGCTTGTACCCGGAAAGCAATAATACAACCTTCTCTGCATCTTCACTTCTTCATTCATCTTCAAACAGTGCCAGAGTGGGTTTCAAGTGA 3387 0.4145 MPSSRQSFYISFSSSSSFWFSIILFHSIFLYGLAFSANHEASVLFSWLRSSASPPPPSFSNWNMLDTSPCNWTSIACSSQGFITEINIQSIPLELSLPSNLSFFLHLQKLVISDANLTGTIPINIGDCSALTVIDLNSNNLVGSIPASIGKLQNLQSLSLNSNQLTGKIPVELSNCISLKSIIIFDNQLSGTISPELGKLSKLEILRAGGNKDIVGKIPEELGECSNLTVLGLADTRISGSLPASLGRLSKLQNLSIYTTMLSGEIPAELGNCSELVDLFLYENSLSGSIPSELGKLQKLEQLFLWQNSLVGAIPEEIGNCTSLRKIDLSLNSLSGTIPLSLGNLLKLEEFMISDNNVSGSIPSSLSKASYLQQLQVDTNQLSGLIPPELGKLSKLTVFFAWQNQLEGSIPSSLANCSNLQSLDLSHNALTGSIPSGLFKLQNLTKLLLISNDISSSIPSEIGSCSSLIRLRLGNNRITGGIPETIGSLKSLNFLDLSENRLSGQVPEEIGNCTELQMIDLSSNNLEGALPNSLSSLASLQVFDASSNRFSGLIPTSFGRLVTLNKLILGGNLFSGPIPASLSLCSSLQMLDLSDNELTGSIPAELGRIETLEIALNLSCNSLSGPIPDQISALTKLSILDLSHNQLEGGLNSLAGLDNLVSLNISYNKFTGYLPDNKLFRQLSPKDLTGNQGLCSSGQDSCFVSDSSKTDLTLNGSDVRKSRRLKLAIALLVVLTILMTIMGIIAVIKARRTIRDDDSELGDSWSWQYIPFQKLNFSVEQVLRCLVDGNIIGKGCSGVVYRAEMDNEVIAVKKLWPTTMDAGEGLKDDKSGIRDSFSTEVKTLGSIRHKNIVRFLGCCWNRNTRLLIYDYMPNGSLSSLLHERRGNFLEWELRYRILLGAAEGLAYLHHDCVPPIVHRDIKPNNILIGLEFEPYIADFGLAKLVDDGGFNRSSNTVAGSYGYIAPEYGYMMKITEKSDVYSYGVVLLEVLTGKQPIDPTIPEGQHVVDWVRQKRGVEVLDPSLLSRPESEIEEMMQASGIALLCVNSSPDERPTMKDVTAMLKEIRHEREEYAKVDVLLKKSPASDVLATSSSLPAMQSLYPESNNTTFSASSLLHSSSNSARVGFK 1128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1490 1128 FunFam Nuclear pore complex protein NUP107 37 193 - -
Dere13g1490 1128 Gene3D Ribonuclease Inhibitor 294 372 IPR032675 -
Dere13g1490 1128 Gene3D Ribonuclease Inhibitor 373 440 IPR032675 -
Dere13g1490 1128 Pfam Leucine rich repeat N-terminal domain 38 78 IPR013210 -
Dere13g1490 1128 Gene3D Phosphorylase Kinase; domain 1 766 871 - -
Dere13g1490 1128 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 530 1063 - -
Dere13g1490 1128 FunFam Predicted protein 194 291 - -
Dere13g1490 1128 ProSiteProfiles Protein kinase domain profile. 786 1071 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1490 1128 SMART serkin_6 786 1063 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1490 1128 Pfam Protein kinase domain 789 1060 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1490 1128 Gene3D Ribonuclease Inhibitor 441 705 IPR032675 -
Dere13g1490 1128 ProSitePatterns Serine/Threonine protein kinases active-site signature. 916 928 IPR008271 GO:0004672|GO:0006468
Dere13g1490 1128 SMART LRR_sd22_2 489 512 - -
Dere13g1490 1128 SMART LRR_sd22_2 513 539 - -
Dere13g1490 1128 SMART LRR_sd22_2 417 446 - -
Dere13g1490 1128 SMART LRR_sd22_2 634 659 - -
Dere13g1490 1128 SMART LRR_sd22_2 152 173 - -
Dere13g1490 1128 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 769 871 - -
Dere13g1490 1128 Pfam Leucine rich repeat 106 165 IPR001611 GO:0005515
Dere13g1490 1128 Pfam Leucine rich repeat 467 526 IPR001611 GO:0005515
Dere13g1490 1128 Pfam Leucine rich repeat 539 598 IPR001611 GO:0005515
Dere13g1490 1128 Pfam Leucine rich repeat 616 670 IPR001611 GO:0005515
Dere13g1490 1128 Gene3D Transferase(Phosphotransferase) domain 1 872 1084 - -
Dere13g1490 1128 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 292 401 - -
Dere13g1490 1128 Gene3D Ribonuclease Inhibitor 188 293 IPR032675 -
Dere13g1490 1128 SMART LRR_typ_2 634 656 IPR003591 -
Dere13g1490 1128 SMART LRR_typ_2 657 682 IPR003591 -
Dere13g1490 1128 SMART LRR_typ_2 297 321 IPR003591 -
Dere13g1490 1128 SMART LRR_typ_2 489 513 IPR003591 -
Dere13g1490 1128 SMART LRR_typ_2 417 441 IPR003591 -
Dere13g1490 1128 SMART LRR_typ_2 537 560 IPR003591 -
Dere13g1490 1128 SMART LRR_typ_2 442 465 IPR003591 -
Dere13g1490 1128 SMART LRR_typ_2 152 176 IPR003591 -
Dere13g1490 1128 SMART LRR_typ_2 585 609 IPR003591 -
Dere13g1490 1128 ProSitePatterns Protein kinases ATP-binding region signature. 792 814 IPR017441 GO:0005524
Dere13g1490 1128 SUPERFAMILY L domain-like 46 405 - -
Dere13g1490 1128 SUPERFAMILY Protein kinase-like (PK-like) 763 1063 IPR011009 -
Dere13g1490 1128 Pfam Leucine Rich Repeat 419 438 IPR001611 GO:0005515
Dere13g1490 1128 PRINTS Leucine-rich repeat signature 420 433 - -
Dere13g1490 1128 PRINTS Leucine-rich repeat signature 634 647 - -
Dere13g1490 1128 ProSiteProfiles Leucine-rich repeat profile. 419 442 IPR001611 GO:0005515
Dere13g1490 1128 SUPERFAMILY L domain-like 386 704 - -
Dere13g1490 1128 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 872 1081 - -
Dere13g1490 1128 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 419 706 - -
Dere13g1490 1128 Gene3D Ribonuclease Inhibitor 36 187 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1490 Dere-ChrDere13 20001828 20005630 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1490 34 1079 Receptor kinase-like Gene Family AT5G56040 48.776 0.0 975
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Dere13g1490 Pkinase 1.1e-42 CL0016