Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1472 ATGGAGAGAAAACTCCTGTACTTGCTTCCACATAGACGCTTCTGCTCTTCCGCCCCTGAGATTCCATCCCTTTACTCCTTTCTTCAACCCTCTCTCTTTGCCCTTAAAAGAAACCCTTCAGCTTCTCAGGAACCCACCAAGCTCCCAACTTCACTACCACAGTCCCTCACTCCTGACCAAATAACCACCCTGCAAAAAACTCTTCATAAGTCTCTCATCACCAATGACACGGATGAGGCATGGAAGTCTTTCAAGACTCTCACAAGCAATTCGGCCTTCCCAAGTAAGTCAATCACCAATTCCCTCATCACCCACTTGTCCTCACATGGGGATGTTCACAACCTCAAGAGGTCTTTTGCATCTGTAGTATATATGATAGAGAAGAACCCTAAAATATTAGATTTTGAAACTGTCCATACCATGCTTCATTCCATGAAAGGAGCCAATCTTGCTGCCCCTGCATTTGCCCTCGTCAAGTGCATGTTCAAGAACAGATTTTTTGTTCCATTTAGTGTTTGGGGAAATGTGCTTGCTGAAATTAGTCGGAAGAATGGTAACCTTGTTGCTTTTTTACGCATTTTTGAAGAGAATTGTAGGATTGCTTCGGATGAGAAGTTGGATTCCATGAAACCTGACCTGGCTGCTTGTAATGCAGCACTAGAAGGGTCATGTTGTGACCTTGAATCAGTGAGTGATGCTGAAAATGTTGTTGAAATAATGACACTTTTGGGAGTTAGACCAGATGAATCCAGTTTTGGATTTCTTGCTTATTTGTATGCATTGAAGGGGCTTGAAGAAAAGATAAATGAGCTAAGATTTTTAATGGGTGGATTTGGTTTCTCAAACAAAAAGGAATTCTATTGTAATTTAATCAATGGGTATGTTAAATCAGGCAATTTAGTATCAGTTGAGTCAACAATTCTCCAAAGTTTGAAAGATAGAGATGGCAATAGTTGGAATTTTGGGGAAGAAACCTACTGTGAATTAGTCAAGGGATATCTTCAGATGGGTAATATCAAGGGATTAGCAAATTTAATCATTGAAGCTCAGAAGTTAGAGCCTCCAAATACTGTAGTTGATAAATTTATAGGTTATGGTATTGTTAGTGCATGTGTTAACACTGGATTATCGAACAAGGCACACAGCATTCTTGATGAAATGAATGCTCTGGGGGGATCTGTAGGTCTTGGGGTCTATGTGCCAATCTTGAAAGCTTACTGCAAAGAAAATCGAACCACTGAAGCTACTCAATTGGTCATGGAGATTAGTAATTCAGGTCTAAAATTGGATGTTGAAAGCTATGATGCTCTGATAGATTCATCCATGTCCAACCAAGATTTTCAGTCAGCTTTTACATTATTTAGGGATATGAGGGAGGCAAGGATTTCTAATTTGAAGGGGAGCTACCTAACTATAATGACAGGTTTGATGGAGAACCATCGACCTGAGTTGATGGCAGCTTTCTTGGATGAGGTGGCTGAGGACCCTCGAATTGAAGTCGGTACTCATGACTGGAATTCTATTATTCATGCTTTCTGTAAAGCTGGGAGACTGGAAGATGCAAGAAGAACATTTAGAAGGATGATATTCCTACAATTTGAGCCAAATGATCAGACATATTTGTCCCTAATTAATGGGTATGTCTTGGCGGAGAAATATTTTAGTGTTCTAATGCTGTGGAATGAGGTGAAGCGAAAGCTATCCACAGATGGACAGAAAGGGATCAAATTTGACCATAGTCTGGTTGATGCTTTCTTGTATGCTATGGTGAAGGGAGGTTTCTTTGACGCAGTTATGCAAGTTGTGGAGAAATCTAATGAGATGAAGATCTTTGTTGATAAATGGAGATACAAGCAAGCATTCATGGAGACTCATAAGAAACTCAAAGTGGCAAAGTTAAGAAAGAGAAACTTCAGAAAAATGGAAGCACTTATTGCTTTTAAGAACTGGGCTGGCTTAAATGCATGA 1968 0.3994 MERKLLYLLPHRRFCSSAPEIPSLYSFLQPSLFALKRNPSASQEPTKLPTSLPQSLTPDQITTLQKTLHKSLITNDTDEAWKSFKTLTSNSAFPSKSITNSLITHLSSHGDVHNLKRSFASVVYMIEKNPKILDFETVHTMLHSMKGANLAAPAFALVKCMFKNRFFVPFSVWGNVLAEISRKNGNLVAFLRIFEENCRIASDEKLDSMKPDLAACNAALEGSCCDLESVSDAENVVEIMTLLGVRPDESSFGFLAYLYALKGLEEKINELRFLMGGFGFSNKKEFYCNLINGYVKSGNLVSVESTILQSLKDRDGNSWNFGEETYCELVKGYLQMGNIKGLANLIIEAQKLEPPNTVVDKFIGYGIVSACVNTGLSNKAHSILDEMNALGGSVGLGVYVPILKAYCKENRTTEATQLVMEISNSGLKLDVESYDALIDSSMSNQDFQSAFTLFRDMREARISNLKGSYLTIMTGLMENHRPELMAAFLDEVAEDPRIEVGTHDWNSIIHAFCKAGRLEDARRTFRRMIFLQFEPNDQTYLSLINGYVLAEKYFSVLMLWNEVKRKLSTDGQKGIKFDHSLVDAFLYAMVKGGFFDAVMQVVEKSNEMKIFVDKWRYKQAFMETHKKLKVAKLRKRNFRKMEALIAFKNWAGLNA 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1472 655 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 501 535 IPR002885 -
Dere13g1472 655 Pfam PPR repeat family 505 547 IPR002885 -
Dere13g1472 655 Gene3D Tetratricopeptide repeat domain 362 461 IPR011990 GO:0005515
Dere13g1472 655 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 430 464 IPR002885 -
Dere13g1472 655 Pfam Pentatricopeptide repeat domain 418 463 IPR002885 -
Dere13g1472 655 Gene3D Tetratricopeptide repeat domain 180 361 IPR011990 GO:0005515
Dere13g1472 655 NCBIfam pentatricopeptide repeat 505 536 IPR002885 -
Dere13g1472 655 Gene3D Tetratricopeptide repeat domain 462 620 IPR011990 GO:0005515
Dere13g1472 655 PANTHER BNAC05G43320D PROTEIN 16 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1472 Dere-ChrDere13 19877313 19879280 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1472 262 566 Miscellaneous Gene Families AT4G11690 24.756 2.18e-15 77.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere13g1472 13 19877313 19879280 Dere13g1472 13 19877313 19879280 ECH