Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1466 ATGAAGTCTAAAAAGCCTGATCTAAACATCAGAAAACGTTCGTTAACCAGTGACAACCTGAGAGTCTCAACTGAACTCAAGCGAAAAACCCTAGAGCACATCGAAGCTCAATCAATGGCGTCGCAAATAGCGATCCTTGCTCGGTCACGGTCTCTGATCAAAATGCTTCACTCTAACACTGCTAACACGTCCGTGAAGACAATTACCACATTCACTTTCCTCTCTCAGGAACCTCAACTAGCTGAGTCCCCTACACCGGCTGCCCCAGCCCCACTTCCTCCCAACCCTGCCTCTGGTAGTCCTCTCTACAATGAGAATTGGCGAAGCCCAATTCCCCCTTCCGCATCCCAGTCAGTGATCCCACTAGGGTTTTTAAACCTTGCGAGTGGTGATCGCATCCAATCAATGGCTCAGGCTTATGATGTTCAGAGCTTGATGAATTTGTTCGCTGACTGGATGGCCTCGCAAAGGTGGGCTGATGTCAAACAGTTGTTCGAATTTTGGGTTAAGTCGTTGGACAAGAATGGGAAGCCGAATAAGCCTGATGTGAATTTGTATAACCATTATCTGAGAGCGAACTTGATGCTTGGTGCTTCGGCTGGGGAGCTACTCGATTTGTTAGCTCAAATGGAGGAGTTTGCGATCACACCCAACACTGCTTCGTTCAATTTGGTGCTTAAAGCAATGTACCAGGCCAGGGAGACTGAGGCTGCCGAACAATTGCTGGAAAGGATGCTGCTGACTGGAAATGATTCTCGCCCCGATGATGAATCATATAATTTGGTCATTGGAATGCTGTTTTTGACTGGCCAGATTGATGCTGCGTTGAAATATATAGATTTGAGCCTGAAATCTAGTTATATGTTGTCAACAAAGGTGTTCATGGACTGTGTAAATAGTTGTGTCAAGAAGGGCAGGCTAGATACTTTGGCAGCAATAATTGAAAAGTGCAAGACAATGGATCAGAACAAATCTCTTTGCCCCGCATGGAATGTGTGCAATTATATAGCTGAAATTGCGATGCAGCAGGATAATAGCAAGCTAGCTTATTATTCCCTGGAGTTTATGGCTATGTGGATTGCAAGGGGTGAGCAGGCAAGACCTGCTGTATTGCTTTCCGTGGATGAAGGTTTAGTTGTGTCAGCTCTTGCCACTGCAGGTAGGACCTATAGTTCTGATCTGCTAGATGCAGCATGGACTATTTTACGTCGCTCATTGCGTCAAAAAAAGGCTCCTAACCCTGAATCTTATCTCGGAAAGATAAATGCCCTTGCATCAATGGGGAACTTGCAAAGGGCTTTTAGTACGCTACATGACTTTGAGTCTGCTTATGGAGATTATGGTCAAGAAGTTGAAGAAATGTTCTCCCCTTTTACTTCTTTACATCCATTGGTTGTGGCATGTTCCAAGAAGGGATTCGAGACTTTGGATTCTGTTTATTTTCAACTGGAAAATTTGAGTCGAGCAGAGACTCCTTATAAATCTGTAGCTGCTCTAAACTGCATCATTTTAGGGTGTGCAAATATATGGGACCTTGATCGTGCATACCAGACTTTTGAAGCAATTGGATCCACTTTTGGGCTCACACCTGATATTCATTCATACAATGCGCTAATGCATGCATTTGGGAAGCTCAAGAAGACACATGAAGCTTCTAGGGTGTTTGAGCACTTAGTAAGTTTGGGTGTAAAACCAAATGCAATGTCATATTCTCTGCTTGTGGATGCCCAACTCATGAACCGAGATGTCAAAGCTGCTCTGGCTTTGATTGATGATATGGTGGCTGCTGGATTTGAACCTTCAAAAGAGATGCTCAAAAAGGTTAGAAGGCGATGCATGCGAGAGATGGACTATGAAAGTGATGACCGAGTGGAGTCAATTGCCAAATCTCGTAATATTCGAATGGGTTCAGAAGCACGTCGGGACATCCTATTCAATCTTGAGTACAGCTTGGATTATGCTTAA 1965 0.4427 MKSKKPDLNIRKRSLTSDNLRVSTELKRKTLEHIEAQSMASQIAILARSRSLIKMLHSNTANTSVKTITTFTFLSQEPQLAESPTPAAPAPLPPNPASGSPLYNENWRSPIPPSASQSVIPLGFLNLASGDRIQSMAQAYDVQSLMNLFADWMASQRWADVKQLFEFWVKSLDKNGKPNKPDVNLYNHYLRANLMLGASAGELLDLLAQMEEFAITPNTASFNLVLKAMYQARETEAAEQLLERMLLTGNDSRPDDESYNLVIGMLFLTGQIDAALKYIDLSLKSSYMLSTKVFMDCVNSCVKKGRLDTLAAIIEKCKTMDQNKSLCPAWNVCNYIAEIAMQQDNSKLAYYSLEFMAMWIARGEQARPAVLLSVDEGLVVSALATAGRTYSSDLLDAAWTILRRSLRQKKAPNPESYLGKINALASMGNLQRAFSTLHDFESAYGDYGQEVEEMFSPFTSLHPLVVACSKKGFETLDSVYFQLENLSRAETPYKSVAALNCIILGCANIWDLDRAYQTFEAIGSTFGLTPDIHSYNALMHAFGKLKKTHEASRVFEHLVSLGVKPNAMSYSLLVDAQLMNRDVKAALALIDDMVAAGFEPSKEMLKKVRRRCMREMDYESDDRVESIAKSRNIRMGSEARRDILFNLEYSLDYA 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1466 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 531 565 IPR002885 -
Dere13g1466 654 Gene3D Tetratricopeptide repeat domain 473 632 IPR011990 GO:0005515
Dere13g1466 654 Pfam Pentatricopeptide repeat domain 180 229 IPR002885 -
Dere13g1466 654 Gene3D Tetratricopeptide repeat domain 138 358 IPR011990 GO:0005515
Dere13g1466 654 PANTHER OS07G0599000 PROTEIN 39 653 IPR044605 -
Dere13g1466 654 MobiDBLite consensus disorder prediction 79 105 - -
Dere13g1466 654 Pfam PPR repeat family 530 576 IPR002885 -
Dere13g1466 654 NCBIfam pentatricopeptide repeat 569 601 IPR002885 -
Dere13g1466 654 NCBIfam pentatricopeptide repeat 533 567 IPR002885 -
Dere13g1466 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 566 600 IPR002885 -
Dere13g1466 654 MobiDBLite consensus disorder prediction 84 98 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1466 235 601 Glycosyltransferase AT1G05670 22.016 6.95e-12 66.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere13g1466 13 19826726 19831024 Dere13g1466 13 19826726 19831024 ECH