Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1456 ATGGAGGAGAGGAAGTTCGTGTGCAAGTATTGCAACAAGAAGTACCCATGTGGGAAGTCTCTGGGTGGACACATCAGGACCCATATGACAGCTGAACATTCATCACCTCAATCCGAGGAAGTTAGAACCAATGCCGATGATGTCGTCAAGTTCGATGGTGGAAGAAAGAGGAAAAGCGACTTTGGGGCTGAAGAAACTGCTTCTGGAAACCCCACTTATGGCCTCCGAGAAAACCCCAAGAGAACAACCAGGTTCGTGCATTCCAACGCCGCTTTACAGCAAGAGAGATTCTGCAAAGAATGCGGGAAGGGCTTTCTGTCTCTGAAAGCTCTCTGTGGCCACATGGCTTGTCATTCGGAGAAAGATAAAGGGACGACGAACAAGTTTGAGAACAATTCTGGGTTTAGCGAGAAGCAGAAATTGGTGATGGACAGCCAATCGGACACTGAGACTTCTGCTCCCAATCATCCTAGGAGATCCAGAAGAATGAGGTTCAAGACAATCAACAATAATACCAATAATCACTCTTCTTCTGTTCCGTTGGCGAATGGTTCTTCCTCAGTGTCCGAGGTGGAGCAGGAACAAGAAGAGGTCGCTAGGTGTTTGATGTTATTGTCCAAAGACTCTACCCATAGGGGTCGTTTTGTTTTGCCTACTGAGTCTTCGGATAACAATTCTGTAGTTCTAGAGGCAAAATCACAGTCGATGGACACGAGAATTACTTTCAACAACGGCAAAAAGAGCTCTGCGTCTAATGGTTTTGAGATTTTGGAGGAGAAGATGAAGGTGACGCAGTATAAGGACATGAAGTTGAAGTCTGCTGAGATTGTTGGTTCTGATAATTCAGATTCTGGGTGTTTCAGATATGGTCCCAAAAAGTTGGATTCGGATGTTTCAATTGATGGGTATCTCCGGAATGGTGAATTCAAGACACCAAAAGTGGGAGACAGGTCTGGGTTTGAGTTTAATCACGACTACGATGCTGAATCGAGGAAGAAGATGCTGAGCAAGAACAGGGGAAGAACCCGAAGCACTGAACCCAGAAAACTAGTTTTGGAGGATATGGACGACGACACAACAGATGGAGCTACAAGGGAAGAGTTCATCAATTGGAGAAAGAGAGCAAGCTATGATTCTCTAAGCCAAAACAATTCAATTGGGGTTTCTTGCAAGAAGACACCAAATAGTATTCCCAATGAGGGATCATGGAAGCAAGAGAGCTTAAACAGTGAAAAAGTCATCAATGGCTCTTATGATTCAGCATACGAGAGTGATGAGAGCAGCACAGACACTGATGCTTATCCTGCTTCGGAGCCTCATAGCAGCAAGGTCTTGAATGGAAAAAAGACCAGCAAGTCGAAGAAGAAATTGAAGTCCAAGAAAAGTAGGGACCATGAATGCCCAATCTGCTACAAAATTTTCAGGTCAGGCCAAGCATTAGGAGGTCACAAAAGGTCCCATTTTGTTGGAGGTTCTGAAGAGAACACACTGGTGATCAAACAGGGTTCTCCTGTGGTTCCATGCCTGATTGATCTCAATCTACCTGCTCCTGTTGATGATTAG 1563 0.4491 MEERKFVCKYCNKKYPCGKSLGGHIRTHMTAEHSSPQSEEVRTNADDVVKFDGGRKRKSDFGAEETASGNPTYGLRENPKRTTRFVHSNAALQQERFCKECGKGFLSLKALCGHMACHSEKDKGTTNKFENNSGFSEKQKLVMDSQSDTETSAPNHPRRSRRMRFKTINNNTNNHSSSVPLANGSSSVSEVEQEQEEVARCLMLLSKDSTHRGRFVLPTESSDNNSVVLEAKSQSMDTRITFNNGKKSSASNGFEILEEKMKVTQYKDMKLKSAEIVGSDNSDSGCFRYGPKKLDSDVSIDGYLRNGEFKTPKVGDRSGFEFNHDYDAESRKKMLSKNRGRTRSTEPRKLVLEDMDDDTTDGATREEFINWRKRASYDSLSQNNSIGVSCKKTPNSIPNEGSWKQESLNSEKVINGSYDSAYESDESSTDTDAYPASEPHSSKVLNGKKTSKSKKKLKSKKSRDHECPICYKIFRSGQALGGHKRSHFVGGSEENTLVIKQGSPVVPCLIDLNLPAPVDD 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1456 520 SMART c2h2final6 465 487 IPR013087 -
Dere13g1456 520 SMART c2h2final6 6 28 IPR013087 -
Dere13g1456 520 SMART c2h2final6 96 118 IPR013087 -
Dere13g1456 520 SUPERFAMILY beta-beta-alpha zinc fingers 97 487 IPR036236 -
Dere13g1456 520 MobiDBLite consensus disorder prediction 128 153 - -
Dere13g1456 520 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Dere13g1456 520 MobiDBLite consensus disorder prediction 121 162 - -
Dere13g1456 520 MobiDBLite consensus disorder prediction 420 436 - -
Dere13g1456 520 ProSitePatterns Zinc finger C2H2 type domain signature. 467 487 IPR013087 -
Dere13g1456 520 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Dere13g1456 520 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
Dere13g1456 520 ProSiteProfiles Zinc finger C2H2 type domain profile. 465 487 IPR013087 -
Dere13g1456 520 Pfam C2H2-type zinc finger 98 120 - -
Dere13g1456 520 Pfam C2H2-type zinc finger 6 29 - -
Dere13g1456 520 Pfam C2H2-type zinc finger 465 487 - -
Dere13g1456 520 MobiDBLite consensus disorder prediction 331 361 - -
Dere13g1456 520 MobiDBLite consensus disorder prediction 420 460 - -
Dere13g1456 520 MobiDBLite consensus disorder prediction 382 404 - -
Dere13g1456 520 MobiDBLite consensus disorder prediction 53 78 - -
Dere13g1456 520 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 519 - -
Dere13g1456 520 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Dere13g1456 520 SUPERFAMILY beta-beta-alpha zinc fingers 2 31 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1456 Dere-ChrDere13 19707757 19709319 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1456 1 520 C2H2 Transcription Factor Family AT1G26610 38.321 5.71e-87 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere13g1456 zf-C2H2_6 5.6e-10 CL0361