Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1425 ATGGAAGAGACAGAGGAGTCCAATGGTAAGAAGAAATTCACAAGCCAAAGAAGGAGCTTAAGGGCAGGAGCGAACTCTCATGAGCATCACTATCAGCATCAGTTTTGGTTGTGCAACCAGAACAAGTATCAGAGGTACTGTCCGGCTCTTCTTCCTCTACCTTCTCTGTTACCTCTGCAACTAGCTTTGACGCCACCGTTCCCTCAAAACCACCCCATCAAAGCCAAAACTCATTTACCGAAATATCCATGCAAGCTCAATAATAATTCTCCCTTCGCTGCCTCCTCAGACAACAAGGTCTCAGAACCCACAGTTTCTCCTGGTCAGGTGGGGGTTCAACTGCAAACCAAGGAGAAGGCATCCCTTAAGGGAGATGAAGGAAAGAAACTTATACCTGCAAGGGAACCACAGGCATTAATTGCTGCAAGGAGGCCAGACTCTGGTGGCAAAGAAGGTTCTGCGATCTCTCTCCTTGCCAACCACTTTCTGGTGCAATTTAATTCATCACAAAAAATATACCATTACAATGTTGAAATCACTCCTAATCCCTCCAAGGAAGTTGCCAGGGAAATCAAACAGAAATTGGTTGATAACAATCCTGTGGGGTTTTCGGGTGCTGTGCCAGCATATGATGGGCGAAAGAATCTTTACAGCCCAGTGGAATTCCAAAATGATAAACTTGAGTTCTACATAAGCCTCCCAATCCCCACTAGCAAATGGACATTACCTTATGGAGAAATACATGACTTGAAAGAGAAGAGAGAACAGCTTAAACTGTTCAGGATAAATATCAAATTAGTTTCTAAGATTAGCGGGAAGGAGTTGAGTAACTACTTGAGCAAAGAGGGAGATGATTGGGTTCAACTTCCACAGGATTATCTTCATGCTTTGGATGTAGTTTTGAGGGAGAGCCCTACTGAGAAGTGTATACCTGTAGGGAGATCATTCTATTCAAGTTCAATGGGAAGAACCAGAGAGATTGGAGGAGGAGCTGTTGGATTCAGAGGTTTCTTTCAGAGTCTTCGACCAACGCAACAAGGACTCGCTCTCAATGTGGATTTCTCTGTAACTGCTTTCCACGAGAGCATAGGAGTTATTCCATACTTGCAGAAACGTCTCGAGTTCCTTCGAGATCTTTCTCAACAAAAGACAACAAGTTTAACTTGTGAAGAAAGGAAGGAAGTGGAGAAGGCATTGAAGAACATCAGGGTGTTTGTTTGCCATAGAGAAACTGTGCAGAGATACCGTGTCTATGGCTTAACTGAAGAAGCTACTGAAAATCTTTGGTTTGCTGACAGGGACGGGAAGAATTTAAGGCTTGTGAGTTACTTTAAAGATCACTATAACTATGACATTCAATTTAGAAAATTGCCATGCTTGGAAATTAGTAGGAGAAAGCCATGTTATCTCCCTATGGAGCTTTGTGTGATCTGTGAAGGTCAGAAATTCCTTGGCAAGCTGTCTGATGATCAGACGGCAAAGATACTCAAGATGGGCTGCCAAAGACCAAGAGAACGGAAAGCCATAATTGAGGGAGTCATGAGAGGGAATGTGGGGCCTACCAGTGGAAACCAGGAAAGAGAATTCAAACTCAAAGTGTCGAGAGAAATGACAAGGGTGACCGGGAGAATTCTTCACCCTCCCAAGCTAAAGCTTGGAGATGGAGGTCGTGTGAGGAACCTATTTCCTTCTCGCCATGACCGCCAATGGAACTTTCTGGATGGCCATGTCTTTGAAGGAACTAAAATTGAAAGGTGGGCACTAATAAGTTTTGGTGGTACACCTGAGCAGAAGTCTCATATCCCCATATTCATAAACCAGCTATCACAAAGGTGTGAACAATTGGGAATTTTTCTTAACAAGAATACATTCATTACTCCCCAGTTTGAATCAATCCAGGTGCTTAACAATGTTACCCTTTTGGAATCTAAGCTCAAGAAAATCCAGAGAACTGCTTCAAACAATCTCCAGCTGCTTATTTGCATTATGGAGAAAAAACACAAAGGTTACGCAGATTTGAAACGAATTGCTGAGACTAGTGTTGGGGTCGTAAGCCAATGCTGCTTGTACCCGAATCTCATCAAGTTAAGTTCACATTTTTTGGCTAATTTGGCCCTAAAAATAAATGCCAAAGTTGGTGGATGCACAGTTGCCCTATACAATTCGCTTCCTTCTCAAATCCCAAGCCTATTTGAGGTTGATGAGCCAGCCATATTTATGGGTGCTGATGTGACACATCCTCATCCACTCGATGATTTCAATCCATCTGTTGCTGCTGTTGTTGGCAGCATGAATTGGCCAACAGCAAACAAATATATTTCAAGAATAAGGTCTCAAACACATAGAAAAGAGATCATCCAGGATCTTGGTGCAATGGTGGGCGAATTGCTTGATGATTTTTACCAGGAAGTAAAGAAACTCCCTAGGAGAATAATTTTCTTCAGAGATGGGGTTAGTGAAACACAGTTTTATAAAGTACTGGAAGAGGAATTGCAATCCATCAGAGGGGCATGTTCCAAATTTCCTGGTTATAAACCTTTCATTACTTTTGCAGTAGTACAGAAGAGGCATCACACAAGGTTGTTTCCCTTAGAAACTGACCAGTCTTCCACTCAAAACCACTTTTTATACGAGAATATTCCCCCGGGGACTGTTGTTGATACTGTGATCACTCACCCAAAAGAATTTGATTTCTATCTCTGCAGCCACTGGGGTGTGAAAGGAACAAGCAGGCCAACTCATTACCATGTGTTGTGGGATGAAAACCAGTTCACTTCTGATGAACTGCAGAAGCTGGTTTACAATTTATGTTATACTTTTGTGAGGTGCACCAAGCCAATTTCTTTGGTTCCACCTGCTTACTATGCACATTTAGCAGCGTACAGAGGCAGACTGTACCTAGAGCGATCAGAGTCCTCAGGTTTAAACAGAAGTACATCTACAATATCTAGAGCTGCCCCTCCAAAGACAGCACCTCTACCAAGACTTAGTGAAAACATCAAGAAGCTCATGTTCTACTGCTAG 3024 0.4269 MEETEESNGKKKFTSQRRSLRAGANSHEHHYQHQFWLCNQNKYQRYCPALLPLPSLLPLQLALTPPFPQNHPIKAKTHLPKYPCKLNNNSPFAASSDNKVSEPTVSPGQVGVQLQTKEKASLKGDEGKKLIPAREPQALIAARRPDSGGKEGSAISLLANHFLVQFNSSQKIYHYNVEITPNPSKEVAREIKQKLVDNNPVGFSGAVPAYDGRKNLYSPVEFQNDKLEFYISLPIPTSKWTLPYGEIHDLKEKREQLKLFRINIKLVSKISGKELSNYLSKEGDDWVQLPQDYLHALDVVLRESPTEKCIPVGRSFYSSSMGRTREIGGGAVGFRGFFQSLRPTQQGLALNVDFSVTAFHESIGVIPYLQKRLEFLRDLSQQKTTSLTCEERKEVEKALKNIRVFVCHRETVQRYRVYGLTEEATENLWFADRDGKNLRLVSYFKDHYNYDIQFRKLPCLEISRRKPCYLPMELCVICEGQKFLGKLSDDQTAKILKMGCQRPRERKAIIEGVMRGNVGPTSGNQEREFKLKVSREMTRVTGRILHPPKLKLGDGGRVRNLFPSRHDRQWNFLDGHVFEGTKIERWALISFGGTPEQKSHIPIFINQLSQRCEQLGIFLNKNTFITPQFESIQVLNNVTLLESKLKKIQRTASNNLQLLICIMEKKHKGYADLKRIAETSVGVVSQCCLYPNLIKLSSHFLANLALKINAKVGGCTVALYNSLPSQIPSLFEVDEPAIFMGADVTHPHPLDDFNPSVAAVVGSMNWPTANKYISRIRSQTHRKEIIQDLGAMVGELLDDFYQEVKKLPRRIIFFRDGVSETQFYKVLEEELQSIRGACSKFPGYKPFITFAVVQKRHHTRLFPLETDQSSTQNHFLYENIPPGTVVDTVITHPKEFDFYLCSHWGVKGTSRPTHYHVLWDENQFTSDELQKLVYNLCYTFVRCTKPISLVPPAYYAHLAAYRGRLYLERSESSGLNRSTSTISRAAPPKTAPLPRLSENIKKLMFYC 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1425 1007 Pfam Piwi domain 659 965 IPR003165 GO:0003676
Dere13g1425 1007 SMART PAZ_2_a_3 370 510 IPR003100 GO:0005515
Dere13g1425 1007 Pfam PAZ domain 373 495 IPR003100 GO:0005515
Dere13g1425 1007 FunFam protein argonaute 10-like 726 1007 - -
Dere13g1425 1007 ProSiteProfiles PAZ domain profile. 370 479 IPR003100 GO:0005515
Dere13g1425 1007 FunFam Argonaute 10 544 720 - -
Dere13g1425 1007 SUPERFAMILY PAZ domain 357 515 IPR036085 GO:0005515
Dere13g1425 1007 Gene3D - 731 1007 IPR036397 GO:0003676
Dere13g1425 1007 FunFam Protein argonaute 7 357 483 - -
Dere13g1425 1007 Gene3D - 544 720 - -
Dere13g1425 1007 Pfam N-terminal domain of argonaute 154 301 IPR032474 -
Dere13g1425 1007 CDD PAZ_argonaute_like 373 478 - -
Dere13g1425 1007 SUPERFAMILY Ribonuclease H-like 643 968 IPR012337 -
Dere13g1425 1007 CDD Piwi_ago-like 527 967 IPR045246 -
Dere13g1425 1007 Gene3D paz domain 356 483 - -
Dere13g1425 1007 SMART DUF1785_2 310 362 IPR014811 -
Dere13g1425 1007 SMART Piwi_a_2 658 968 IPR003165 GO:0003676
Dere13g1425 1007 MobiDBLite consensus disorder prediction 1 25 - -
Dere13g1425 1007 Pfam Argonaute linker 1 domain 311 360 IPR014811 -
Dere13g1425 1007 ProSiteProfiles Piwi domain profile. 658 968 IPR003165 GO:0003676
Dere13g1425 1007 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 136 969 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1425 Dere-ChrDere13 19405031 19408789 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1425 96 1007 Eukaryotic Initiation Factors Gene Family AT1G48410 40.674 0.0 634