LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere13g1414	ATGGTCGAGTCATCATCGTGCTCTGAGAAGGTAGGGTTGAAGAAAGGGCCATGGACTCCTGAGGAAGACCACAAGCTCATGACCCACATTCAACAACATGGCCATGGAAGTTGGCGAGCCTTGCCTGCAAAAGCTGGGCTTCAGAGATGTGGGAAGAGTTGCAGACTGAGGTGGACGAACTACCTAAGACCTGATATAAAACGAGGCAAGTTCAGCTTGCAAGAAGAGCAAACCATCATTCAACTTCATGCACTTCTTGGAAACAGATGGTCAGCCATAGCTGCACACTTGCCAAAGAGAACAGACAACGAGATCAAGAACTACTGGAACACCCACCTCAAGAAGAGGCTCATTAGACTGGGCATAGACCCTACCACCCACAAGCCCAAAAACGACGCCGTCAACGGCCAGTCGAAGGACTCAGCCAACCTCAGCCACATGGCTCAGTGGGAGAGTGCTCGGCTCGAAGCCGAAGCTAGACTCGTCAAAGAATCCAAGCTGCAGGTCCAGAATCAGCTCGGCTCCTCCTCCTCCACCTCTCACCAGCCTGCACTGACTCGGCTCGTCCTCAACAAAATCACGCCTCAGCCATCACTGCCTCCTTGCCTGGACGTGCTCAAGGCATGGCAAAATTCATGGTCCACGTCGAAGGCGTCAACTCCAACTAAACACAACACCAAAATGCATAGTATGTATGCCATGATGCTCGCCACCGATGACCTCGAGTCGCCGACGTCCACGTTGAGCTTCCCGGAGACCACCCTCCCGAACTCAAAGAGCAACAACAGTATTGCCTCTGGGCTTATCAAGCAAAACTTAGTTCCTTCTTCCACCACCTCCGCCGCCGCACATGACGGTGGAATCATGAAAAAAGGAAGTGACAGTGAACCATGGGGACACACAACGCCGAGCTTGCGAGACGACGACATTATGGTGGCGGTTGAAGCATTTAGATCAAGAGGTGGAGGATGTAATGAGAACTATGCTGAAACTGACATGGAAGGTCTCGATAATGATGATGTGCTTCTCTATGTGCCCAACGAGAACCCAATCCAAGAAAACTTGGGAATCCTTAACGAGGATGAAGGAAGCACCAACTTTGAGGAGAAGCATTATTGGAATACCATATTCAACTTGGTCAATGATCTGACCTCGCCTGCTTCGCCTGTGTTCTGA	1176	0.5094	MVESSSCSEKVGLKKGPWTPEEDHKLMTHIQQHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIAAHLPKRTDNEIKNYWNTHLKKRLIRLGIDPTTHKPKNDAVNGQSKDSANLSHMAQWESARLEAEARLVKESKLQVQNQLGSSSSTSHQPALTRLVLNKITPQPSLPPCLDVLKAWQNSWSTSKASTPTKHNTKMHSMYAMMLATDDLESPTSTLSFPETTLPNSKSNNSIASGLIKQNLVPSSTTSAAAHDGGIMKKGSDSEPWGHTTPSLRDDDIMVAVEAFRSRGGGCNENYAETDMEGLDNDDVLLYVPNENPIQENLGILNEDEGSTNFEEKHYWNTIFNLVNDLTSPASPVF	391

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere13g1414	391	Gene3D	-	14	67	-	-
	Dere13g1414	391	ProSiteProfiles	Myb-like domain profile.	63	113	IPR001005	-
	Dere13g1414	391	Gene3D	-	70	117	-	-
	Dere13g1414	391	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	10	62	IPR017930	-
	Dere13g1414	391	FunFam	MYB transcription factor	70	117	-	-
	Dere13g1414	391	SUPERFAMILY	Homeodomain-like	12	109	IPR009057	-
	Dere13g1414	391	MobiDBLite	consensus disorder prediction	1	21	-	-
	Dere13g1414	391	Pfam	Myb-like DNA-binding domain	15	62	IPR001005	-
	Dere13g1414	391	Pfam	Myb-like DNA-binding domain	68	113	IPR001005	-
	Dere13g1414	391	SMART	sant	14	64	IPR001005	-
	Dere13g1414	391	SMART	sant	67	115	IPR001005	-
	Dere13g1414	391	FunFam	MYB-related transcription factor	14	67	-	-
	Dere13g1414	391	MobiDBLite	consensus disorder prediction	123	142	-	-
	Dere13g1414	391	MobiDBLite	consensus disorder prediction	276	305	-	-
	Dere13g1414	391	CDD	SANT	70	113	IPR001005	-
	Dere13g1414	391	ProSiteProfiles	Myb-like domain profile.	10	62	IPR001005	-
	Dere13g1414	391	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR	1	228	-	-
	Dere13g1414	391	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	63	117	IPR017930	-
	Dere13g1414	391	CDD	SANT	17	62	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere13g1414	Dere-ChrDere13	19231394	19233505	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere13g1414	5	391	MYB Transcription Factor Family	AT3G01140	44.335	7.11e-98	293

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Dere13g1414		Myb_DNA-binding	3.4e-14	CL0123