Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1413 ATGGTGATGTCATCGTCGTGCTGTGAGAAGGTAGGGTTGAAGAAAGGGCCATGGACTCCTGAGGAAGATCACAAGCTAATGGCTTTCATTCAACAACATGGCCATGGAAGTTGGCGTGCCTTGCCTGCAAAAGCTGCCATAGCAGCTCACTTGCCGAAGAGAACAGACAACGAGATCAAGAATTACTGGAACACCCACCTCAAGAAGAGGCTCATCAGACTAGGCATAGACCCTACCACCCACAAGCCTATGACAAACGACGCCGTCAACGGCCAGTCGAAGGACGCAGCCAACCTAAGCCACATGGCTCAGTGGGAGAGTGCTCGGCTCGAAGCGGAAGCCAGACTTGTCAAAGAATCCAAGCTGCAGCTCGAGAATCAGCTCGGCTCCTCTTCTTCCCAACCTGCACTGACTCGGCTAGTCCTCAACAAAATCACGCCTCAGCCATCACTACCTCCTTGCTTGGACGTGCTCAAGGCGTGGCAAAATTCGTGGACCACGTCGGATTCGTCAACTCCGACTAAAGATTACACCAAAATGCAGAGCATGTACGCCATAATGCTCGCCACCACGGACGACCTCGAGTCGCCGACGTCTACGTTGAGCTTCCCGGAGACCATCCTCCCAAACTCCAAGTGTAACAGCAATACTATTACTACCTCTGAGCATATCAAACAAAGCCTAGTTCCTCCCTCCACCGCCGCCGCCGCAAATGACAGTGGAATCATGATAGAAGGGAGTGACAGCGAACCATGGGGAAACACAATGCCAAGCTTGCGAGACGACGACATTATGGTGGCGGTGGAAGCATTTAGATCGAGAGGAGGAGGTCATGATGAGAAATGTGCGGACATGGAAGGTCTCCATAGTGGTGACGTGCTTTTCTATGTACCCAGCGAGAACCCACCACAAGAAAACTTGGGAATCTTAAATGTTCGGGATGGAGGAAGCACTGACTTTGAGGAGAAGCATTATTGGAATACCATCCTCAACTTTGTCAATGATTTGCCCTGA 1014 0.5128 MVMSSSCCEKVGLKKGPWTPEEDHKLMAFIQQHGHGSWRALPAKAAIAAHLPKRTDNEIKNYWNTHLKKRLIRLGIDPTTHKPMTNDAVNGQSKDAANLSHMAQWESARLEAEARLVKESKLQLENQLGSSSSQPALTRLVLNKITPQPSLPPCLDVLKAWQNSWTTSDSSTPTKDYTKMQSMYAIMLATTDDLESPTSTLSFPETILPNSKCNSNTITTSEHIKQSLVPPSTAAAANDSGIMIEGSDSEPWGNTMPSLRDDDIMVAVEAFRSRGGGHDEKCADMEGLHSGDVLFYVPSENPPQENLGILNVRDGGSTDFEEKHYWNTILNFVNDLP 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1413 337 Coils Coil 107 127 - -
Dere13g1413 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 71 IPR017930 -
Dere13g1413 337 SUPERFAMILY Homeodomain-like 9 76 IPR009057 -
Dere13g1413 337 Pfam Myb-like DNA-binding domain 15 67 IPR001005 -
Dere13g1413 337 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 45 205 - -
Dere13g1413 337 Gene3D - 12 73 - -
Dere13g1413 337 ProSiteProfiles Myb-like domain profile. 10 67 IPR001005 -
Dere13g1413 337 SMART sant 14 69 IPR001005 -
Dere13g1413 337 CDD SANT 17 67 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1413 Dere-ChrDere13 19215605 19217395 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1413 5 135 MYB Transcription Factor Family AT5G15310 52.778 3.03e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere13g1413 Myb_DNA-binding 2.6e-13 CL0123